Molecular dynamics simulations as a tool for improving protein stability
Pikkemaat, Mariël G, Linssen, Antonius B M, Berendsen, Herman J C, Janssen, Dick B
Published in Protein engineering (01.03.2002)
Published in Protein engineering (01.03.2002)
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Journal Article
Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme
Hayward, Steven, Kitao, Akio, Berendsen, Herman J.C.
Published in Proteins, structure, function, and bioinformatics (01.03.1997)
Published in Proteins, structure, function, and bioinformatics (01.03.1997)
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Journal Article
Wilfred van Gunsteren: 35 Years of Biomolecular Simulation
Hünenberger, Philippe H, Mark, Alan E, Berendsen, Herman J.C
Published in Journal of chemical theory and computation (09.10.2012)
Published in Journal of chemical theory and computation (09.10.2012)
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Journal Article
Calculation of the Redox Potential of the Protein Azurin and Some Mutants
van den Bosch, Marieke, Swart, Marcel, Snijders†, Jaap G, Berendsen, Herman J.C, Mark, Alan E, Oostenbrink, Chris, van Gunsteren, Wilfred F, Canters, Gerard W
Published in Chembiochem : a European journal of chemical biology (01.04.2005)
Published in Chembiochem : a European journal of chemical biology (01.04.2005)
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Journal Article
Surface Binding of Alamethicin Stabilizes its Helical Structure: Molecular Dynamics Simulations
Tieleman, D. Peter, Berendsen, Herman J.C., Sansom, Mark S.P.
Published in Biophysical journal (01.06.1999)
Published in Biophysical journal (01.06.1999)
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Journal Article
GROMACS: Fast, flexible, and free
Van Der Spoel, David, Lindahl, Erik, Hess, Berk, Groenhof, Gerrit, Mark, Alan E., Berendsen, Herman J. C.
Published in Journal of computational chemistry (01.12.2005)
Published in Journal of computational chemistry (01.12.2005)
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Journal Article
Early Steps in the Unfolding of Thermolysin-like Proteases
Vriend, G, Berendsen, H J, van den Burg, B, Venema, G, Eijsink, V G
Published in The Journal of biological chemistry (25.12.1998)
Published in The Journal of biological chemistry (25.12.1998)
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Journal Article
High-Throughput Simulations Reveal Membrane-Mediated Effects of Alcohols on MscL Gating
Melo, Manuel N, Arnarez, Clément, Sikkema, Hendrik, Kumar, Neeraj, Walko, Martin, Berendsen, Herman J. C, Kocer, Armagan, Marrink, Siewert J, Ingólfsson, Helgi I
Published in Journal of the American Chemical Society (22.02.2017)
Published in Journal of the American Chemical Society (22.02.2017)
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Journal Article
LINCS: A linear constraint solver for molecular simulations
Hess, Berk, Bekker, Henk, Berendsen, Herman J. C., Fraaije, Johannes G. E. M.
Published in Journal of computational chemistry (01.09.1997)
Published in Journal of computational chemistry (01.09.1997)
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Journal Article
Photoactivation of the Photoactive Yellow Protein: Why Photon Absorption Triggers a Trans-to-Cis Isomerization of the Chromophore in the Protein
Groenhof, Gerrit, Bouxin-Cademartory, Mathieu, Hess, Berk, de Visser, Sam P., Berendsen, Herman J. C., Olivucci, Massimo, Mark, Alan E., Robb, Michael A.
Published in Journal of the American Chemical Society (07.04.2004)
Published in Journal of the American Chemical Society (07.04.2004)
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Journal Article
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations
De Jong, Djurre H., Schäfer, Lars V., De Vries, Alex H., Marrink, Siewert J., Berendsen, Herman J. C., Grubmüller, Helmut
Published in Journal of computational chemistry (15.07.2011)
Published in Journal of computational chemistry (15.07.2011)
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Journal Article
Membrane Dependence of the Mechanosensitive Channel of Large Conductance
Ingólfsson, Helgi I., Arnarez, Clement, Kumar, Neeraj, Walko, Martin, Berendsen, Herman J.C., Koçer, Armağan, Marrink, Siewert J.
Published in Biophysical journal (28.01.2014)
Published in Biophysical journal (28.01.2014)
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Journal Article
An application of flexible constraints in Monte Carlo simulations of the isobaric--isothermal ensemble of liquid water and ice Ih with the polarizable and flexible mobile charge densities in harmonic oscillators model
Saint-Martin, Humberto, Hess, Berk, Berendsen, Herman J C
Published in The Journal of chemical physics (15.06.2004)
Published in The Journal of chemical physics (15.06.2004)
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