DELLY: structural variant discovery by integrated paired-end and split-read analysis
Rausch, Tobias, Zichner, Thomas, Schlattl, Andreas, Stütz, Adrian M, Benes, Vladimir, Korbel, Jan O
Published in Bioinformatics (15.09.2012)
Published in Bioinformatics (15.09.2012)
Get full text
Journal Article
Toll-like receptor signaling in thymic epithelium controls monocyte-derived dendritic cell recruitment and Treg generation
Vobořil, Matouš, Brabec, Tomáš, Dobeš, Jan, Šplíchalová, Iva, Březina, Jiří, Čepková, Adéla, Dobešová, Martina, Aidarova, Aigerim, Kubovčiak, Jan, Tsyklauri, Oksana, Štěpánek, Ondřej, Beneš, Vladimír, Sedláček, Radislav, Klein, Ludger, Kolář, Michal, Filipp, Dominik
Published in Nature communications (12.05.2020)
Published in Nature communications (12.05.2020)
Get full text
Journal Article
Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files
Rausch, Tobias, Fritz, Markus Hsi-Yang, Untergasser, Andreas, Benes, Vladimir
Published in BMC genomics (14.03.2020)
Published in BMC genomics (14.03.2020)
Get full text
Journal Article
Cerebral venous sinus thrombosis in infant with COVID-19
Blazkova, Jana, Skalicky, Petr, Bradac, Ondrej, Benes, Vladimir
Published in Acta neurochirurgica (01.03.2022)
Published in Acta neurochirurgica (01.03.2022)
Get full text
Journal Article
Accounting for technical noise in single-cell RNA-seq experiments
Brennecke, Philip, Anders, Simon, Kim, Jong Kyoung, Kołodziejczyk, Aleksandra A, Zhang, Xiuwei, Proserpio, Valentina, Baying, Bianka, Benes, Vladimir, Teichmann, Sarah A, Marioni, John C, Heisler, Marcus G
Published in Nature methods (01.11.2013)
Published in Nature methods (01.11.2013)
Get full text
Journal Article
Vitamin A-Retinoic Acid Signaling Regulates Hematopoietic Stem Cell Dormancy
Cabezas-Wallscheid, Nina, Buettner, Florian, Sommerkamp, Pia, Klimmeck, Daniel, Ladel, Luisa, Thalheimer, Frederic B., Pastor-Flores, Daniel, Roma, Leticia P., Renders, Simon, Zeisberger, Petra, Przybylla, Adriana, Schönberger, Katharina, Scognamiglio, Roberta, Altamura, Sandro, Florian, Carolina M., Fawaz, Malak, Vonficht, Dominik, Tesio, Melania, Collier, Paul, Pavlinic, Dinko, Geiger, Hartmut, Schroeder, Timm, Benes, Vladimir, Dick, Tobias P., Rieger, Michael A., Stegle, Oliver, Trumpp, Andreas
Published in Cell (18.05.2017)
Published in Cell (18.05.2017)
Get full text
Journal Article
The digital MIQE guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments
Huggett, Jim F, Foy, Carole A, Benes, Vladimir, Emslie, Kerry, Garson, Jeremy A, Haynes, Ross, Hellemans, Jan, Kubista, Mikael, Mueller, Reinhold D, Nolan, Tania, Pfaffl, Michael W, Shipley, Gregory L, Vandesompele, Jo, Wittwer, Carl T, Bustin, Stephen A
Published in Clinical chemistry (Baltimore, Md.) (01.06.2013)
Published in Clinical chemistry (Baltimore, Md.) (01.06.2013)
Get full text
Journal Article
Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Li, Simone S., Zhu, Ana, Benes, Vladimir, Costea, Paul I., Hercog, Rajna, Hildebrand, Falk, Huerta-Cepas, Jaime, Nieuwdorp, Max, Salojärvi, Jarkko, Voigt, Anita Y., Zeller, Georg, Sunagawa, Shinichi, de Vos, Willem M., Bork, Peer
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Get full text
Journal Article
Potential of fecal microbiota for early‐stage detection of colorectal cancer
Zeller, Georg, Tap, Julien, Voigt, Anita Y, Sunagawa, Shinichi, Kultima, Jens Roat, Costea, Paul I, Amiot, Aurélien, Böhm, Jürgen, Brunetti, Francesco, Habermann, Nina, Hercog, Rajna, Koch, Moritz, Luciani, Alain, Mende, Daniel R, Schneider, Martin A, Schrotz‐King, Petra, Tournigand, Christophe, Tran Van Nhieu, Jeanne, Yamada, Takuji, Zimmermann, Jürgen, Benes, Vladimir, Kloor, Matthias, Ulrich, Cornelia M, Knebel Doeberitz, Magnus, Sobhani, Iradj, Bork, Peer
Published in Molecular systems biology (01.11.2014)
Published in Molecular systems biology (01.11.2014)
Get full text
Journal Article
The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments
Bustin, Stephen A, Benes, Vladimir, Garson, Jeremy A, Hellemans, Jan, Huggett, Jim, Kubista, Mikael, Mueller, Reinhold, Nolan, Tania, Pfaffl, Michael W, Shipley, Gregory L, Vandesompele, Jo, Wittwer, Carl T
Published in Clinical chemistry (Baltimore, Md.) (01.04.2009)
Published in Clinical chemistry (Baltimore, Md.) (01.04.2009)
Get full text
Journal Article
Drivers and determinants of strain dynamics following fecal microbiota transplantation
Schmidt, Thomas S. B., Li, Simone S., Maistrenko, Oleksandr M., Akanni, Wasiu, Coelho, Luis Pedro, Dolai, Sibasish, Fullam, Anthony, Glazek, Anna M., Hercog, Rajna, Herrema, Hilde, Jung, Ferris, Kandels, Stefanie, Orakov, Askarbek, Thielemann, Roman, von Stetten, Moritz, Van Rossum, Thea, Benes, Vladimir, Borody, Thomas J., de Vos, Willem M., Ponsioen, Cyriel Y., Nieuwdorp, Max, Bork, Peer
Published in Nature medicine (01.09.2022)
Published in Nature medicine (01.09.2022)
Get full text
Journal Article
Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease
Gilsbach, Ralf, Preissl, Sebastian, Grüning, Björn A., Schnick, Tilman, Burger, Lukas, Benes, Vladimir, Würch, Andreas, Bönisch, Ulrike, Günther, Stefan, Backofen, Rolf, Fleischmann, Bernd K., Schübeler, Dirk, Hein, Lutz
Published in Nature communications (22.10.2014)
Published in Nature communications (22.10.2014)
Get full text
Journal Article
mRNA 3′ uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome
Morgan, Marcos, Much, Christian, DiGiacomo, Monica, Azzi, Chiara, Ivanova, Ivayla, Vitsios, Dimitrios M., Pistolic, Jelena, Collier, Paul, Moreira, Pedro N., Benes, Vladimir, Enright, Anton J., O’Carroll, Dónal
Published in Nature (London) (17.08.2017)
Published in Nature (London) (17.08.2017)
Get full text
Journal Article
Clinical and molecular study of radiation-induced gliomas
Trkova, Katerina, Sumerauer, David, Bubenikova, Adela, Krskova, Lenka, Vicha, Ales, Koblizek, Miroslav, Zamecnik, Josef, Jurasek, Bruno, Kyncl, Martin, Malinova, Bela, Ondrova, Barbora, Jones, David T. W., Sill, Martin, Strnadova, Martina, Stolova, Lucie, Misove, Adela, Benes, Vladimir, Zapotocky, Michal
Published in Scientific reports (07.02.2024)
Published in Scientific reports (07.02.2024)
Get full text
Journal Article
Replicative senescence of mesenchymal stem cells: a continuous and organized process
Wagner, Wolfgang, Horn, Patrick, Castoldi, Mirco, Diehlmann, Anke, Bork, Simone, Saffrich, Rainer, Benes, Vladimir, Blake, Jonathon, Pfister, Stefan, Eckstein, Volker, Ho, Anthony D
Published in PloS one (21.05.2008)
Published in PloS one (21.05.2008)
Get full text
Journal Article
The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba
Žárský, Vojtěch, Klimeš, Vladimír, Pačes, Jan, Vlček, Čestmír, Hradilová, Miluše, Beneš, Vladimír, Nývltová, Eva, Hrdý, Ivan, Pyrih, Jan, Mach, Jan, Barlow, Lael, Stairs, Courtney W, Eme, Laura, Hall, Neil, Eliáš, Marek, Dacks, Joel B, Roger, Andrew, Tachezy, Jan
Published in Molecular biology and evolution (19.05.2021)
Published in Molecular biology and evolution (19.05.2021)
Get full text
Journal Article
Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition
Oatley, Morgan, Bölükbası, Özge Vargel, Svensson, Valentine, Shvartsman, Maya, Ganter, Kerstin, Zirngibl, Katharina, Pavlovich, Polina V., Milchevskaya, Vladislava, Foteva, Vladimira, Natarajan, Kedar N., Baying, Bianka, Benes, Vladimir, Patil, Kiran R., Teichmann, Sarah A., Lancrin, Christophe
Published in Nature communications (29.01.2020)
Published in Nature communications (29.01.2020)
Get full text
Journal Article