Engineering microbial consortia for controllable outputs
Lindemann, Stephen R, Bernstein, Hans C, Song, Hyun-Seob, Fredrickson, Jim K, Fields, Matthew W, Shou, Wenying, Johnson, David R, Beliaev, Alexander S
Published in The ISME Journal (01.09.2016)
Published in The ISME Journal (01.09.2016)
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Mathematical Modeling of Microbial Community Dynamics: A Methodological Review
Song, Hyun-Seob, Cannon, William R, Beliaev, Alexander S, Konopka, Allan
Published in Processes (01.12.2014)
Published in Processes (01.12.2014)
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Book Review
A directional electrode separator improves anodic biofilm current density in a well-mixed single-chamber bioelectrochemical system
Anoy, Md Monzurul Islam, Hill, Eric Allen, Garcia, Marci Ranae, Kim, Won-Jun, Beliaev, Alexander S., Beyenal, Haluk
Published in Enzyme and microbial technology (01.10.2024)
Published in Enzyme and microbial technology (01.10.2024)
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Journal Article
Structure of a bacterial cell surface decaheme electron conduit
Clarke, Thomas A, Edwards, Marcus J, Gates, Andrew J, Hall, Andrea, White, Gaye F, Bradley, Justin, Reardon, Catherine L, Shi, Liang, Beliaev, Alexander S, Marshall, Matthew J, Wang, Zheming, Watmough, Nicholas J, Fredrickson, James K, Zachara, John M, Butt, Julea N, Richardson, David J
Published in Proceedings of the National Academy of Sciences - PNAS (07.06.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (07.06.2011)
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Journal Article
Engineering Limonene and Bisabolene Production in Wild Type and a Glycogen-Deficient Mutant of Synechococcus sp. PCC 7002
Davies, Fiona K, Work, Victoria H, Beliaev, Alexander S, Posewitz, Matthew C
Published in Frontiers in bioengineering and biotechnology (19.06.2014)
Published in Frontiers in bioengineering and biotechnology (19.06.2014)
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Journal Article
Tripogon loliiformis tolerates rapid desiccation after metabolic and transcriptional priming during initial drying
Okemo, Pauline A, Njaci, Isaac, Kim, Young-Mo, McClure, Ryan S, Peterson, Matthew J, Beliaev, Alexander S, Hixson, Kim K, Mundree, Sagadevan, Williams, Brett
Published in Scientific reports (23.11.2023)
Published in Scientific reports (23.11.2023)
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Journal Article
Current Production and Metal Oxide Reduction by Shewanella oneidensis MR-1 Wild Type and Mutants
Bretschger, Orianna, Obraztsova, Anna, Sturm, Carter A, Chang, In Seop, Gorby, Yuri A, Reed, Samantha B, Culley, David E, Reardon, Catherine L, Barua, Soumitra, Romine, Margaret F, Zhou, Jizhong, Beliaev, Alexander S, Bouhenni, Rachida, Saffarini, Daad, Mansfeld, Florian, Kim, Byung-Hong, Fredrickson, James K, Nealson, Kenneth H
Published in Applied and Environmental Microbiology (01.11.2007)
Published in Applied and Environmental Microbiology (01.11.2007)
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Journal Article
Towards environmental systems biology of Shewanella
Fredrickson, James K, Tiedje, James M, Romine, Margaret F, Beliaev, Alexander S, Auchtung, Jennifer M, Driscoll, Michael E, Gardner, Timothy S, Nealson, Kenneth H, Osterman, Andrei L, Pinchuk, Grigoriy, Reed, Jennifer L, Rodionov, Dmitry A, Rodrigues, Jorge L. M, Saffarini, Daad A, Serres, Margrethe H, Spormann, Alfred M, Zhulin, Igor B
Published in Nature reviews. Microbiology (01.08.2008)
Published in Nature reviews. Microbiology (01.08.2008)
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Journal Article
Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142
Vu, Trang T, Stolyar, Sergey M, Pinchuk, Grigoriy E, Hill, Eric A, Kucek, Leo A, Brown, Roslyn N, Lipton, Mary S, Osterman, Andrei, Fredrickson, Jim K, Konopka, Allan E, Beliaev, Alexander S, Reed, Jennifer L
Published in PLoS computational biology (01.04.2012)
Published in PLoS computational biology (01.04.2012)
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Journal Article
Pyruvate and Lactate Metabolism by Shewanella oneidensis MR-1 under Fermentation, Oxygen Limitation, and Fumarate Respiration Conditions
PINCHUK, Grigoriy E, GEYDEBREKHT, Oleg V, HILL, Eric A, REED, Jennifer L, KONOPKA, Allan E, BELIAEV, Alexander S, FREDRICKSON, Jim K
Published in Applied and Environmental Microbiology (01.12.2011)
Published in Applied and Environmental Microbiology (01.12.2011)
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Journal Article
c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis
Marshall, Matthew J, Beliaev, Alexander S, Dohnalkova, Alice C, Kennedy, David W, Shi, Liang, Wang, Zheming, Boyanov, Maxim I, Lai, Barry, Kemner, Kenneth M, McLean, Jeffrey S, Reed, Samantha B, Culley, David E, Bailey, Vanessa L, Simonson, Cody J, Saffarini, Daad A, Romine, Margaret F, Zachara, John M, Fredrickson, James K
Published in PLoS biology (01.08.2006)
Published in PLoS biology (01.08.2006)
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Conversion of stranded waste-stream carbon and nutrients into value-added products via metabolically coupled binary heterotroph-photoautotroph system
Bohutskyi, Pavlo, Kucek, Leo A., Hill, Eric, Pinchuk, Grigoriy E., Mundree, Sagadevan G., Beliaev, Alexander S.
Published in Bioresource technology (01.07.2018)
Published in Bioresource technology (01.07.2018)
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Journal Article
Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation
Pinchuk, Grigoriy E, Hill, Eric A, Geydebrekht, Oleg V, De Ingeniis, Jessica, Zhang, Xiaolin, Osterman, Andrei, Scott, James H, Reed, Samantha B, Romine, Margaret F, Konopka, Allan E, Beliaev, Alexander S, Fredrickson, Jim K, Reed, Jennifer L
Published in PLoS computational biology (24.06.2010)
Published in PLoS computational biology (24.06.2010)
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Journal Article
The Role of Shewanella oneidensis MR-1 Outer Surface Structures in Extracellular Electron Transfer
Bouhenni, Rachida A., Vora, Gary J., Biffinger, Justin C., Shirodkar, Sheetal, Brockman, Ken, Ray, Ricky, Wu, Peter, Johnson, Brandy J., Biddle, Eulandria M., Marshall, Matthew J., Fitzgerald, Lisa A., Little, Brenda J., Fredrickson, Jim K., Beliaev, Alexander S., Ringeisen, Bradley R., Saffarini, Daad A.
Published in Electroanalysis (New York, N.Y.) (01.04.2010)
Published in Electroanalysis (New York, N.Y.) (01.04.2010)
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Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization
Pinchuk, Grigory E, Rodionov, Dmitry A, Yang, Chen, Li, Xiaoqing, Osterman, Andrei L, Dervyn, Etienne, Geydebrekht, Oleg V, Reed, Samantha B, Romine, Margaret F, Collart, Frank R, Scott, James H, Fredrickson, Jim K, Beliaev, Alexander S
Published in Proceedings of the National Academy of Sciences - PNAS (24.02.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (24.02.2009)
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Journal Article
Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing
Beliaev, Alexander S, Romine, Margie F, Serres, Margrethe, Bernstein, Hans C, Linggi, Bryan E, Markillie, Lye M, Isern, Nancy G, Chrisler, William B, Kucek, Leo A, Hill, Eric A, Pinchuk, Grigoriy E, Bryant, Donald A, Wiley, H Steven, Fredrickson, Jim K, Konopka, Allan
Published in The ISME Journal (01.11.2014)
Published in The ISME Journal (01.11.2014)
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Journal Article
Feedback-controlled LED photobioreactor for photophysiological studies of cyanobacteria
Melnicki, Matthew R., Pinchuk, Grigoriy E., Hill, Eric A., Kucek, Leo A., Stolyar, Sergey M., Fredrickson, Jim K., Konopka, Allan E., Beliaev, Alexander S.
Published in Bioresource technology (01.04.2013)
Published in Bioresource technology (01.04.2013)
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Journal Article
Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth
Bernstein, Hans C, McClure, Ryan S, Hill, Eric A, Markillie, Lye Meng, Chrisler, William B, Romine, Margie F, McDermott, Jason E, Posewitz, Matthew C, Bryant, Donald A, Konopka, Allan E, Fredrickson, James K, Beliaev, Alexander S
Published in mBio (26.07.2016)
Published in mBio (26.07.2016)
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Journal Article
Generalization of Neural Networks on Second-Order Hypercomplex Numbers
Pavlov, Stanislav, Kozlov, Dmitry, Bakulin, Mikhail, Zuev, Aleksandr, Latyshev, Andrey, Beliaev, Alexander
Published in Mathematics (Basel) (01.09.2023)
Published in Mathematics (Basel) (01.09.2023)
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