Computational Design of Stable and Soluble Biocatalysts
Musil, Milos, Konegger, Hannes, Hon, Jiri, Bednar, David, Damborsky, Jiri
Published in ACS catalysis (01.02.2019)
Published in ACS catalysis (01.02.2019)
Get full text
Journal Article
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
Jurcik, Adam, Bednar, David, Byska, Jan, Marques, Sergio M, Furmanova, Katarina, Daniel, Lukas, Kokkonen, Piia, Brezovsky, Jan, Strnad, Ondrej, Stourac, Jan, Pavelka, Antonin, Manak, Martin, Damborsky, Jiri, Kozlikova, Barbora
Published in Bioinformatics (15.10.2018)
Published in Bioinformatics (15.10.2018)
Get full text
Journal Article
FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants
Bednar, David, Beerens, Koen, Sebestova, Eva, Bendl, Jaroslav, Khare, Sagar, Chaloupkova, Radka, Prokop, Zbynek, Brezovsky, Jan, Baker, David, Damborsky, Jiri
Published in PLoS computational biology (01.11.2015)
Published in PLoS computational biology (01.11.2015)
Get full text
Journal Article
Structural Biology and Protein Engineering of Thrombolytics
Mican, Jan, Toul, Martin, Bednar, David, Damborsky, Jiri
Published in Computational and structural biotechnology journal (01.01.2019)
Published in Computational and structural biotechnology journal (01.01.2019)
Get full text
Journal Article
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
Kozlikova, Barbora, Sebestova, Eva, Sustr, Vilem, Brezovsky, Jan, Strnad, Ondrej, Daniel, Lukas, Bednar, David, Pavelka, Antonin, Manak, Martin, Bezdeka, Martin, Benes, Petr, Kotry, Matus, Gora, Artur, Damborsky, Jiri, Sochor, Jiri
Published in Bioinformatics (Oxford, England) (15.09.2014)
Published in Bioinformatics (Oxford, England) (15.09.2014)
Get full text
Journal Article
Engineering the protein dynamics of an ancestral luciferase
Schenkmayerova, Andrea, Pinto, Gaspar P., Toul, Martin, Marek, Martin, Hernychova, Lenka, Planas-Iglesias, Joan, Daniel Liskova, Veronika, Pluskal, Daniel, Vasina, Michal, Emond, Stephane, Dörr, Mark, Chaloupkova, Radka, Bednar, David, Prokop, Zbynek, Hollfelder, Florian, Bornscheuer, Uwe T., Damborsky, Jiri
Published in Nature communications (14.06.2021)
Published in Nature communications (14.06.2021)
Get full text
Journal Article
InVADo: Interactive Visual Analysis of Molecular Docking Data
Schafer, Marco, Brich, Nicolas, Byska, Jan, Marques, Sergio M., Bednar, David, Thiel, Philipp, Kozlikova, Barbora, Krone, Michael
Published in IEEE transactions on visualization and computer graphics (01.04.2024)
Published in IEEE transactions on visualization and computer graphics (01.04.2024)
Get full text
Journal Article
Substrate inhibition by the blockage of product release and its control by tunnel engineering
Kokkonen, Piia, Beier, Andy, Mazurenko, Stanislav, Damborsky, Jiri, Bednar, David, Prokop, Zbynek
Published in RSC chemical biology (01.04.2021)
Published in RSC chemical biology (01.04.2021)
Get full text
Journal Article
Site-Specific Analysis of Protein Hydration Based on Unnatural Amino Acid Fluorescence
Amaro, Mariana, Brezovský, Jan, Kováčová, Silvia, Sýkora, Jan, Bednář, David, Němec, Václav, Lišková, Veronika, Kurumbang, Nagendra Prasad, Beerens, Koen, Chaloupková, Radka, Paruch, Kamil, Hof, Martin, Damborský, Jiří
Published in Journal of the American Chemical Society (22.04.2015)
Published in Journal of the American Chemical Society (22.04.2015)
Get full text
Journal Article
FireProtDB: database of manually curated protein stability data
Stourac, Jan, Dubrava, Juraj, Musil, Milos, Horackova, Jana, Damborsky, Jiri, Mazurenko, Stanislav, Bednar, David
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
Get full text
Journal Article
Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst
Markova, Klara, Chmelova, Klaudia, Marques, Sérgio M, Carpentier, Philippe, Bednar, David, Damborsky, Jiri, Marek, Martin
Published in Chemical science (Cambridge) (07.11.2020)
Published in Chemical science (Cambridge) (07.11.2020)
Get full text
Journal Article
Illuminating the mechanism and allosteric behavior of NanoLuc luciferase
Nemergut, Michal, Pluskal, Daniel, Horackova, Jana, Sustrova, Tereza, Tulis, Jan, Barta, Tomas, Baatallah, Racha, Gagnot, Glwadys, Novakova, Veronika, Majerova, Marika, Sedlackova, Karolina, Marques, Sérgio M, Toul, Martin, Damborsky, Jiri, Prokop, Zbynek, Bednar, David, Janin, Yves L, Marek, Martin
Published in Nature communications (29.11.2023)
Published in Nature communications (29.11.2023)
Get full text
Journal Article
DockVis: Visual Analysis of Molecular Docking Trajectories
Furmanová, Katarína, Vávra, Ondřej, Kozlíková, Barbora, Damborský, Jiří, Vonásek, Vojtěch, Bednář, David, Byška, Jan
Published in Computer graphics forum (01.09.2020)
Published in Computer graphics forum (01.09.2020)
Get full text
Journal Article
Computer-aided engineering of stabilized fibroblast growth factor 21
de La Bourdonnaye, Gabin, Ghazalova, Tereza, Fojtik, Petr, Kutalkova, Katerina, Bednar, David, Damborsky, Jiri, Rotrekl, Vladimir, Stepankova, Veronika, Chaloupkova, Radka
Published in Computational and structural biotechnology journal (01.12.2024)
Published in Computational and structural biotechnology journal (01.12.2024)
Get full text
Journal Article
Screening of Natural Compounds as P-Glycoprotein Inhibitors against Multidrug Resistance
Marques, Sérgio M, Šupolíková, Lucie, Molčanová, Lenka, Šmejkal, Karel, Bednar, David, Slaninová, Iva
Published in Biomedicines (30.03.2021)
Published in Biomedicines (30.03.2021)
Get full text
Journal Article
Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization
Beerens, Koen, Mazurenko, Stanislav, Kunka, Antonin, Marques, Sergio M, Hansen, Niels, Musil, Milos, Chaloupkova, Radka, Waterman, Jitka, Brezovsky, Jan, Bednar, David, Prokop, Zbynek, Damborsky, Jiri
Published in ACS catalysis (05.10.2018)
Published in ACS catalysis (05.10.2018)
Get full text
Journal Article