Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
Gohl, Daryl M, Vangay, Pajau, Garbe, John, MacLean, Allison, Hauge, Adam, Becker, Aaron, Gould, Trevor J, Clayton, Jonathan B, Johnson, Timothy J, Hunter, Ryan, Knights, Dan, Beckman, Kenneth B
Published in Nature biotechnology (01.09.2016)
Published in Nature biotechnology (01.09.2016)
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Journal Article
A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2
Gohl, Daryl M, Garbe, John, Grady, Patrick, Daniel, Jerry, Watson, Ray H B, Auch, Benjamin, Nelson, Andrew, Yohe, Sophia, Beckman, Kenneth B
Published in BMC genomics (04.12.2020)
Published in BMC genomics (04.12.2020)
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Journal Article
Evaluating the Information Content of Shallow Shotgun Metagenomics
Hillmann, Benjamin, Al-Ghalith, Gabriel A, Shields-Cutler, Robin R, Zhu, Qiyun, Gohl, Daryl M, Beckman, Kenneth B, Knight, Rob, Knights, Dan
Published in mSystems (01.11.2018)
Published in mSystems (01.11.2018)
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Journal Article
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
Battle, Alexis, Mostafavi, Sara, Zhu, Xiaowei, Potash, James B, Weissman, Myrna M, McCormick, Courtney, Haudenschild, Christian D, Beckman, Kenneth B, Shi, Jianxin, Mei, Rui, Urban, Alexander E, Montgomery, Stephen B, Levinson, Douglas F, Koller, Daphne
Published in Genome research (01.01.2014)
Published in Genome research (01.01.2014)
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Journal Article
Dissecting and tuning primer editing by proofreading polymerases
Gohl, Daryl M, Auch, Benjamin, Certano, Amanda, LeFrançois, Brice, Bouevitch, Anne, Doukhanine, Evgueni, Fragel, Christina, Macklaim, Jean, Hollister, Emily, Garbe, John, Beckman, Kenneth B
Published in Nucleic acids research (07.09.2021)
Published in Nucleic acids research (07.09.2021)
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Journal Article
Biological Aging Predicts Vulnerability to COVID-19 Severity in UK Biobank Participants
Kuo, Chia-Ling, Pilling, Luke C, Atkins, Janice L, Masoli, Jane A H, Delgado, João, Tignanelli, Christopher, Kuchel, George A, Melzer, David, Beckman, Kenneth B, Levine, Morgan E
Published in The Journals of Gerontology: Series A (01.08.2021)
Published in The Journals of Gerontology: Series A (01.08.2021)
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Journal Article
Web Resource
Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies
Dorajoo, Rajkumar, Chang, Xuling, Gurung, Resham Lal, Li, Zheng, Wang, Ling, Wang, Renwei, Beckman, Kenneth B, Adams-Haduch, Jennifer, M, Yiamunaa, Liu, Sylvia, Meah, Wee Yang, Sim, Kar Seng, Lim, Su Chi, Friedlander, Yechiel, Liu, Jianjun, van Dam, Rob M, Yuan, Jian-Min, Koh, Woon-Puay, Khor, Chiea Chuen, Heng, Chew-Kiat
Published in Nature communications (06.06.2019)
Published in Nature communications (06.06.2019)
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Journal Article
Measuring sequencer size bias using REcount: a novel method for highly accurate Illumina sequencing-based quantification
Gohl, Daryl M, Magli, Alessandro, Garbe, John, Becker, Aaron, Johnson, Darrell M, Anderson, Shea, Auch, Benjamin, Billstein, Bradley, Froehling, Elyse, McDevitt, Shana L, Beckman, Kenneth B
Published in Genome Biology (29.04.2019)
Published in Genome Biology (29.04.2019)
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Journal Article
Genetic and environmental predictors of serum 25-hydroxyvitamin D concentrations among middle-aged and elderly Chinese in Singapore
Robien, Kim, Butler, Lesley M., Wang, Renwei, Beckman, Kenneth B., Walek, Dinesha, Koh, Woon-Puay, Yuan, Jian-Min
Published in British journal of nutrition (14.02.2013)
Published in British journal of nutrition (14.02.2013)
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Journal Article
Leukocyte telomere length in relation to risk of lung adenocarcinoma incidence: Findings from the Singapore Chinese Health Study
Yuan, Jian‐Min, Beckman, Kenneth B., Wang, Renwei, Bull, Caroline, Adams‐Haduch, Jennifer, Huang, Joyce Y., Jin, Aizhen, Opresko, Patricia, Newman, Anne B., Zheng, Yun‐Ling, Fenech, Michael, Koh, Woon‐Puay
Published in International journal of cancer (01.06.2018)
Published in International journal of cancer (01.06.2018)
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Journal Article
Association between mitochondrial genetic variation and breast cancer risk: The Multiethnic Cohort
Li, Yuqing, Giorgi, Elena E, Beckman, Kenneth B, Caberto, Christian, Kazma, Remi, Lum-Jones, Annette, Haiman, Christopher A, Marchand, Loïc Le, Stram, Daniel O, Saxena, Richa, Cheng, Iona
Published in PloS one (02.10.2019)
Published in PloS one (02.10.2019)
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Journal Article
Association of Genes, Pathways, and Haplogroups of the Mitochondrial Genome with the Risk of Colorectal Cancer: The Multiethnic Cohort
Li, Yuqing, Beckman, Kenneth B, Caberto, Christian, Kazma, Remi, Lum-Jones, Annette, Haiman, Christopher A, Le Marchand, Loïc, Stram, Daniel O, Saxena, Richa, Cheng, Iona
Published in PloS one (04.09.2015)
Published in PloS one (04.09.2015)
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Journal Article
Persistent microbial dysbiosis in preterm premature rupture of membranes from onset until delivery
Baldwin, Elizabeth A, Walther-Antonio, Marina, MacLean, Allison M, Gohl, Daryl M, Beckman, Kenneth B, Chen, Jun, White, Bryan, Creedon, Douglas J, Chia, Nicholas
Published in PeerJ (San Francisco, CA) (26.11.2015)
Published in PeerJ (San Francisco, CA) (26.11.2015)
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Journal Article
Mycobacterium tuberculosis Requires the Outer Membrane Lipid Phthiocerol Dimycocerosate for Starvation-Induced Antibiotic Tolerance
Block, Alisha M, Namugenyi, Sarah B, Palani, Nagendra P, Brokaw, Alyssa M, Zhang, Leanne, Beckman, Kenneth B, Tischler, Anna D
Published in mSystems (23.02.2023)
Published in mSystems (23.02.2023)
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Journal Article
Epigenomic response to albuterol treatment in asthma-relevant airway epithelial cells
Perez-Garcia, Javier, Pino-Yanes, Maria, Plender, Elizabeth G, Everman, Jamie L, Eng, Celeste, Jackson, Nathan D, Moore, Camille M, Beckman, Kenneth B, Medina, Vivian, Sharma, Sunita, Winnica, Daniel Efrain, Holguin, Fernando, Rodríguez-Santana, José, Villar, Jesús, Ziv, Elad, Seibold, Max A, Burchard, Esteban G
Published in Clinical epigenetics (03.10.2023)
Published in Clinical epigenetics (03.10.2023)
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Journal Article
Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF
Dale, Jennifer L, Beckman, Kenneth B, Willett, Julia L E, Nilson, Jennifer L, Palani, Nagendra P, Baller, Joshua A, Hauge, Adam, Gohl, Daryl M, Erickson, Raymond, Manias, Dawn A, Sadowsky, Michael J, Dunny, Gary M
Published in mSystems (01.09.2018)
Published in mSystems (01.09.2018)
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Journal Article
Comparing Genetic Ancestry and Self-Described Race in African Americans Born in the United States and in Africa
Yaeger, Rona, Avila-Bront, Alexa, Abdul, Kazeem, Nolan, Patricia C, Grann, Victor R, Birchette, Mark G, Choudhry, Shweta, Burchard, Esteban G, Beckman, Kenneth B, Gorroochurn, Prakash, Ziv, Elad, Consedine, Nathan S, Joe, Andrew K
Published in Cancer epidemiology, biomarkers & prevention (01.06.2008)
Published in Cancer epidemiology, biomarkers & prevention (01.06.2008)
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Journal Article
Genome-wide association study identifies genetic loci associated with iron deficiency
McLaren, Christine E, Garner, Chad P, Constantine, Clare C, McLachlan, Stela, Vulpe, Chris D, Snively, Beverly M, Gordeuk, Victor R, Nickerson, Debbie A, Cook, James D, Leiendecker-Foster, Catherine, Beckman, Kenneth B, Eckfeldt, John H, Barcellos, Lisa F, Murray, Joseph A, Adams, Paul C, Acton, Ronald T, Killeen, Anthony A, McLaren, Gordon D
Published in PloS one (31.03.2011)
Published in PloS one (31.03.2011)
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Journal Article
5-HTP inhibits eosinophilia via intracellular endothelial 5-HTRs; SNPs in 5-HTRs associate with asthmatic lung function
Walker, Matthew T., Bloodworth, Jeffrey C., Kountz, Timothy S., McCarty, Samantha L., Green, Jeremy E., Ferrie, Ryan P., Campbell, Jackson A., Averill, Samantha H., Beckman, Kenneth B., Grammer, Leslie C., Eng, Celeste, Avila, Pedro C., Farber, Harold J., Rodriguez-Cintron, William, Rodriguez-Santana, Jose R., Serebrisky, Denise, Thyne, Shannon M., Seibold, Max A., Burchard, Esteban G., Kumar, Rajesh, Cook-Mills, Joan M.
Published in Frontiers in allergy (23.05.2024)
Published in Frontiers in allergy (23.05.2024)
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Journal Article