Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion
Gutierrez, Jahir M, Feizi, Amir, Li, Shangzhong, Kallehauge, Thomas B, Hefzi, Hooman, Grav, Lise M, Ley, Daniel, Baycin Hizal, Deniz, Betenbaugh, Michael J, Voldborg, Bjorn, Faustrup Kildegaard, Helene, Min Lee, Gyun, Palsson, Bernhard O, Nielsen, Jens, Lewis, Nathan E
Published in Nature communications (02.01.2020)
Published in Nature communications (02.01.2020)
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Journal Article
Proteomic Analysis of Chinese Hamster Ovary Cells
Baycin-Hizal, Deniz, Tabb, David L, Chaerkady, Raghothama, Chen, Lily, Lewis, Nathan E, Nagarajan, Harish, Sarkaria, Vishaldeep, Kumar, Amit, Wolozny, Daniel, Colao, Joe, Jacobson, Elena, Tian, Yuan, O’Meally, Robert N, Krag, Sharon S, Cole, Robert N, Palsson, Bernhard O, Zhang, Hui, Betenbaugh, Michael
Published in Journal of proteome research (02.11.2012)
Published in Journal of proteome research (02.11.2012)
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Journal Article
Physiologic and pathophysiologic consequences of altered sialylation and glycosylation on ion channel function
Baycin-Hizal, Deniz, Gottschalk, Allan, Jacobson, Elena, Mai, Sunny, Wolozny, Daniel, Zhang, Hui, Krag, Sharon S., Betenbaugh, Michael J.
Published in Biochemical and biophysical research communications (17.10.2014)
Published in Biochemical and biophysical research communications (17.10.2014)
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Journal Article
Cellular traffic cops: the interplay between lipids and proteins regulates vesicular formation, trafficking, and signaling in mammalian cells
Kumar, Amit, Baycin-Hizal, Deniz, Zhang, Yue, Bowen, Michael A, Betenbaugh, Michael J
Published in Current opinion in biotechnology (01.12.2015)
Published in Current opinion in biotechnology (01.12.2015)
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Journal Article
Exploiting the proteomics revolution in biotechnology: from disease and antibody targets to optimizing bioprocess development
Heffner, Kelley M, Hizal, Deniz Baycin, Kumar, Amit, Shiloach, Joseph, Zhu, Jie, Bowen, Michael A, Betenbaugh, Michael J
Published in Current opinion in biotechnology (01.12.2014)
Published in Current opinion in biotechnology (01.12.2014)
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Journal Article
A multi-pronged investigation into the effect of glucose starvation and culture duration on fed-batch CHO cell culture
Fan, Yuzhou, Jimenez Del Val, Ioscani, Müller, Christian, Lund, Anne Mathilde, Sen, Jette Wagtberg, Rasmussen, Søren Kofoed, Kontoravdi, Cleo, Baycin-Hizal, Deniz, Betenbaugh, Michael J., Weilguny, Dietmar, Andersen, Mikael Rørdam
Published in Biotechnology and bioengineering (01.10.2015)
Published in Biotechnology and bioengineering (01.10.2015)
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Journal Article
GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG–MS Techniques
Baycin-Hizal, Deniz, Tian, Yuan, Akan, Ilhan, Jacobson, Elena, Clark, Dean, Chu, Jeffrey, Palter, Karen, Zhang, Hui, Betenbaugh, Michael J
Published in Journal of proteome research (03.06.2011)
Published in Journal of proteome research (03.06.2011)
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Journal Article
Glycoproteomic and glycomic databases
Baycin Hizal, Deniz, Wolozny, Daniel, Colao, Joseph, Jacobson, Elena, Tian, Yuan, Krag, Sharon S, Betenbaugh, Michael J, Zhang, Hui
Published in Clinical proteomics (13.04.2014)
Published in Clinical proteomics (13.04.2014)
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Journal Article
Adsorption of Olive Leaf (Olea europaea L.) Antioxidants on Silk Fibroin
Bayçın, Deniz, Altıok, Evren, Ülkü, Semra, Bayraktar, Oguz
Published in Journal of agricultural and food chemistry (21.02.2007)
Published in Journal of agricultural and food chemistry (21.02.2007)
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Journal Article
Systems Glycobiology: Integrating Glycogenomics, Glycoproteomics, Glycomics, and Other ‘Omics Data Sets to Characterize Cellular Glycosylation Processes
Bennun, Sandra V., Hizal, Deniz Baycin, Heffner, Kelley, Can, Ozge, Zhang, Hui, Betenbaugh, Michael J.
Published in Journal of molecular biology (14.08.2016)
Published in Journal of molecular biology (14.08.2016)
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Journal Article
Expanded Chinese hamster organ and cell line proteomics profiling reveals tissue-specific functionalities
Heffner, Kelley, Hizal, Deniz Baycin, Majewska, Natalia I, Kumar, Swetha, Dhara, Venkata Gayatri, Zhu, Jie, Bowen, Michael, Hatton, Diane, Yerganian, George, Yerganian, Athena, O'Meally, Robert, Cole, Robert, Betenbaugh, Michael
Published in Scientific reports (28.09.2020)
Published in Scientific reports (28.09.2020)
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Journal Article
Statistical Models for the Analysis of Isobaric Tags Multiplexed Quantitative Proteomics
D’Angelo, Gina, Chaerkady, Raghothama, Yu, Wen, Hizal, Deniz Baycin, Hess, Sonja, Zhao, Wei, Lekstrom, Kristen, Guo, Xiang, White, Wendy I, Roskos, Lorin, Bowen, Michael A, Yang, Harry
Published in Journal of proteome research (01.09.2017)
Published in Journal of proteome research (01.09.2017)
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Journal Article
Proteogenomic Annotation of Chinese Hamsters Reveals Extensive Novel Translation Events and Endogenous Retroviral Elements
Li, Shangzhong, Cha, Seong Won, Heffner, Kelly, Hizal, Deniz Baycin, Bowen, Michael A, Chaerkady, Raghothama, Cole, Robert N, Tejwani, Vijay, Kaushik, Prashant, Henry, Michael, Meleady, Paula, Sharfstein, Susan T, Betenbaugh, Michael J, Bafna, Vineet, Lewis, Nathan E
Published in Journal of proteome research (07.06.2019)
Published in Journal of proteome research (07.06.2019)
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Journal Article
Proteogenomic annotation of the Chinese hamster reveals extensive novel translation events and endogenous retroviral elements
Li, Shangzhong, Cha, Seong Won, Heffner, Kelly, Hizal, Deniz Baycin, Bowen, Michael A., Chaerkady, Raghothama, Cole, Robert N., Tejwani, Vijay, Kaushik, Prashant, Henry, Michael, Meleady, Paula, Sharfstein, Susan T., Betenbaugh, Michael J., Bafna, Vineet, Lewis, Nathan E.
Published in Journal of proteome research (08.05.2019)
Published in Journal of proteome research (08.05.2019)
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Journal Article
Interconversion of Peptide Mass Spectral Libraries Derivatized with iTRAQ or TMT Labels
Zhang, Zheng, Yang, Xiaoyu, Mirokhin, Yuri A, Tchekhovskoi, Dmitrii V, Ji, Weihua, Markey, Sanford P, Roth, Jeri, Neta, Pedatsur, Hizal, Deniz Baycin, Bowen, Michael A, Stein, Stephen E
Published in Journal of proteome research (02.09.2016)
Published in Journal of proteome research (02.09.2016)
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Journal Article
Lessons from the Hamster: Cricetulus griseus Tissue and CHO Cell Line Proteome Comparison
Heffner, Kelley M, Hizal, Deniz Baycin, Yerganian, George S, Kumar, Amit, Can, Özge, O’Meally, Robert, Cole, Robert, Chaerkady, Raghothama, Wu, Herren, Bowen, Michael A, Betenbaugh, Michael J
Published in Journal of proteome research (06.10.2017)
Published in Journal of proteome research (06.10.2017)
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Journal Article
Increased expression of the integral membrane proteins EGFR and FGFR3 in anti-apoptotic Chinese hamster ovary cell lines
Ohsfeldt, Erika, Huang, Szu-Han, Baycin-Hizal, Deniz, Kristoffersen, Linda, Le, Thuy-My T, Li, Edwin, Hristova, Kalina, Betenbaugh, Michael J
Published in Biotechnology and applied biochemistry (01.05.2012)
Published in Biotechnology and applied biochemistry (01.05.2012)
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