The impact of sex on gene expression across human tissues
Oliva, Meritxell, Muñoz-Aguirre, Manuel, Kim-Hellmuth, Sarah, Wucher, Valentin, Gewirtz, Ariel D H, Cotter, Daniel J, Parsana, Princy, Kasela, Silva, Balliu, Brunilda, Viñuela, Ana, Castel, Stephane E, Mohammadi, Pejman, Aguet, François, Zou, Yuxin, Khramtsova, Ekaterina A, Skol, Andrew D, Garrido-Martín, Diego, Reverter, Ferran, Brown, Andrew, Evans, Patrick, Gamazon, Eric R, Payne, Anthony, Bonazzola, Rodrigo, Barbeira, Alvaro N, Hamel, Andrew R, Martinez-Perez, Angel, Soria, José Manuel, Pierce, Brandon L, Stephens, Matthew, Eskin, Eleazar, Dermitzakis, Emmanouil T, Segrè, Ayellet V, Im, Hae Kyung, Engelhardt, Barbara E, Ardlie, Kristin G, Montgomery, Stephen B, Battle, Alexis J, Lappalainen, Tuuli, Guigó, Roderic, Stranger, Barbara E
Published in Science (American Association for the Advancement of Science) (11.09.2020)
Published in Science (American Association for the Advancement of Science) (11.09.2020)
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The GTEx Consortium atlas of genetic regulatory effects across human tissues
Aguet, François, Anand, Shankara, Ardlie, Kristin G., Gabriel, Stacey, Getz, Gad A., Graubert, Aaron, Hadley, Kane, Handsaker, Robert E., Huang, Katherine H., Kashin, Seva, Li, Xiao, MacArthur, Daniel G., Meier, Samuel R., Nedzel, Jared L., Nguyen, Duyen T., Segrè, Ayellet V., Todres, Ellen, Balliu, Brunilda, Barbeira, Alvaro N., Battle, Alexis, Bonazzola, Rodrigo, Brown, Andrew, Brown, Christopher D., Castel, Stephane E., Conrad, Donald F., Cotter, Daniel J., Cox, Nancy, Das, Sayantan, de Goede, Olivia M., Dermitzakis, Emmanouil T., Einson, Jonah, Engelhardt, Barbara E., Eskin, Eleazar, Eulalio, Tiffany Y., Ferraro, Nicole M., Flynn, Elise D., Fresard, Laure, Gamazon, Eric R., Garrido-Martín, Diego, Gay, Nicole R., Gloudemans, Michael J., Guigó, Roderic, Hame, Andrew R., He, Yuan, Hoffman, Paul J., Hormozdiari, Farhad, Hou, Lei, Im, Hae Kyung, Jo, Brian, Kasela, Silva, Kellis, Manolis, Kim-Hellmuth, Sarah, Kwong, Alan, Lappalainen, Tuuli, Li, Xin, Liang, Yanyu, Mangul, Serghei, Mohammadi, Pejman, Montgomery, Stephen B., Muñoz-Aguirre, Manuel, Nachun, Daniel C., Nobel, Andrew B., Oliva, Meritxell, Park, YoSon, Park, Yongjin, Parsana, Princy, Rao, Abhiram S., Reverter, Ferran, Rouhana, John M., Sabatti, Chiara, Saha, Ashis, Stephens, Matthew, Stranger, Barbara E., Strober, Benjamin J., Teran, Nicole A., Viñuela, Ana, Wang, Gao, Wen, Xiaoquan, Wright, Fred, Wucher, Valentin, Zou, Yuxin, Ferreira, Pedro G., Li, Gen, Melé, Marta, Yeger-Lotem, Esti, Barcus, Mary E., Bradbury, Debra, Krubit, Tanya, McLean, Jeffrey A., Qi, Liqun, Robinson, Karna, Roche, Nancy V., Smith, Anna M., Sobin, Leslie, Tabor, David E., Undale, Anita, Bridge, Jason, Brigham, Lori E., Foster, Barbara A., Gillard, Bryan M.
Published in Science (American Association for the Advancement of Science) (11.09.2020)
Published in Science (American Association for the Advancement of Science) (11.09.2020)
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Impact of regulatory variation from RNA to protein
Battle, Alexis, Khan, Zia, Wang, Sidney H., Mitrano, Amy, Ford, Michael J., Pritchard, Jonathan K., Gilad, Yoav
Published in Science (American Association for the Advancement of Science) (06.02.2015)
Published in Science (American Association for the Advancement of Science) (06.02.2015)
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The impact of structural variation on human gene expression
Chiang, Colby, Scott, Alexandra J, Davis, Joe R, Tsang, Emily K, Li, Xin, Kim, Yungil, Hadzic, Tarik, Damani, Farhan N, Ganel, Liron, Montgomery, Stephen B, Battle, Alexis, Conrad, Donald F, Hall, Ira M
Published in Nature genetics (01.05.2017)
Published in Nature genetics (01.05.2017)
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The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
Ardlie, Kristin G., Deluca, David S., Segrè, Ayellet V., Sullivan, Timothy J., Young, Taylor R., Gelfand, Ellen T., Trowbridge, Casandra A., Maller, Julian B., Tukiainen, Taru, Lek, Monkol, Ward, Lucas D., Kheradpour, Pouya, Iriarte, Benjamin, Meng, Yan, Palmer, Cameron D., Esko, Tõnu, Winckler, Wendy, Hirschhorn, Joel N., Kellis, Manolis, MacArthur, Daniel G., Getz, Gad, Shabalin, Andrey A., Li, Gen, Zhou, Yi-Hui, Nobel, Andrew B., Rusyn, Ivan, Wright, Fred A., Lappalainen, Tuuli, Ferreira, Pedro G., Ongen, Halit, Rivas, Manuel A., Battle, Alexis, Mostafavi, Sara, Monlong, Jean, Sammeth, Michael, Mele, Marta, Reverter, Ferran, Goldmann, Jakob M., Koller, Daphne, Guigó, Roderic, McCarthy, Mark I., Dermitzakis, Emmanouil T., Gamazon, Eric R., Im, Hae Kyung, Konkashbaev, Anuar, Nicolae, Dan L., Cox, Nancy J., Flutre, Timothée, Wen, Xiaoquan, Stephens, Matthew, Pritchard, Jonathan K., Tu, Zhidong, Zhang, Bin, Huang, Tao, Long, Quan, Lin, Luan, Yang, Jialiang, Zhu, Jun, Liu, Jun, Brown, Amanda, Mestichelli, Bernadette, Tidwell, Denee, Lo, Edmund, Salvatore, Mike, Shad, Saboor, Thomas, Jeffrey A., Lonsdale, John T., Moser, Michael T., Gillard, Bryan M., Karasik, Ellen, Ramsey, Kimberly, Choi, Christopher, Foster, Barbara A., Syron, John, Fleming, Johnell, Magazine, Harold, Hasz, Rick, Walters, Gary D., Bridge, Jason P., Miklos, Mark, Sullivan, Susan, Barker, Laura K., Traino, Heather M., Mosavel, Maghboeba, Siminoff, Laura A., Valley, Dana R., Rohrer, Daniel C., Jewell, Scott D., Branton, Philip A., Sobin, Leslie H., Barcus, Mary, Qi, Liqun, McLean, Jeffrey, Hariharan, Pushpa, Um, Ki Sung, Wu, Shenpei, Tabor, David, Shive, Charles, Smith, Anna M., Buia, Stephen A.
Published in Science (American Association for the Advancement of Science) (08.05.2015)
Published in Science (American Association for the Advancement of Science) (08.05.2015)
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A Quantitative Proteome Map of the Human Body
Jiang, Lihua, Chan, Joanne, Fang, Huaying, Anand, Shankara, Gabriel, Stacey, Graubert, Aaron, Hadley, Kane, Huang, Katherine H., MacArthur, Daniel G., Meier, Samuel R., Segrè, Ayellet V., Balliu, Brunilda, Barbeira, Alvaro N., Battle, Alexis, Brown, Andrew, Brown, Christopher D., Castel, Stephane E., Conrad, Don, Cotter, Daniel J., Das, Sayantan, de Goede, Olivia M., Dermitzakis, Emmanouil T., Eskin, Eleazar, Eulalio, Tiffany Y., Garrido-Martín, Diego, Guigó, Roderic, He, Yuan, Hoffman, Paul J., Hormozdiari, Farhad, Im, Hae Kyung, Jo, Brian, Kasela, Silva, Kellis, Manolis, Kim-Hellmuth, Sarah, Li, Xin, Mohammadi, Pejman, Montgomery, Stephen B., Muñoz-Aguirre, Manuel, Nachun, Daniel C., Oliva, Meritxell, Parsana, Princy, Sabatti, Chiara, Skol, Andrew D., Stephens, Matthew, Strober, Benjamin J., Teran, Nicole A., Viñuela, Ana, Wang, Gao, Wucher, Valentin, Zou, Yuxin, Ferreira, Pedro G., Yeger-Lotem, Esti, Barcus, Mary E., Bradbury, Debra, Krubit, Tanya, McLean, Jeffrey A., Smith, Anna M., Sobin, Leslie, Tabor, David E., Brigham, Lori E., Gillard, Bryan M., Hasz, Richard, Johnson, Mark, Kopen, Gene, Moser, Michael T., Myer, Kevin, Shad, Saboor, Thomas, Jeffrey A., Washington, Michael, Rohrer, Daniel C., Valley, Dana R., Davis, David A., Mash, Deborah C., Mosavel, Maghboeba, Siminoff, Laura A., Flicek, Paul, Juettemann, Thomas, Powell, Conner C., Rosenbloom, Kate R., Ruffier, Magali, Sheppard, Dan, Taylor, Kieron, Akey, Joshua, Demanelis, Kathryn, Feinberg, Andrew P., Hansen, Kasper D., Kibriya, Muhammad G., Li, Jin Billy, Li, Qin, Linder, Sandra E., Pierce, Brandon L., Smith, Kevin S., Tang, Hua, Carithers, Latarsha J., Koester, Susan E., Little, A. Roger, Moore, Helen M., Rao, Abhi K., Vaught, Jimmie B., Volpi, Simona
Published in Cell (01.10.2020)
Published in Cell (01.10.2020)
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Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood
Qi, Ting, Wu, Yang, Zeng, Jian, Zhang, Futao, Xue, Angli, Jiang, Longda, Zhu, Zhihong, Kemper, Kathryn, Yengo, Loic, Zheng, Zhili, Marioni, Riccardo E., Montgomery, Grant W., Deary, Ian J., Wray, Naomi R., Visscher, Peter M., McRae, Allan F., Yang, Jian
Published in Nature communications (11.06.2018)
Published in Nature communications (11.06.2018)
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Addressing confounding artifacts in reconstruction of gene co-expression networks
Parsana, Princy, Ruberman, Claire, Jaffe, Andrew E, Schatz, Michael C, Battle, Alexis, Leek, Jeffrey T
Published in Genome Biology (16.05.2019)
Published in Genome Biology (16.05.2019)
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Cell type-specific genetic regulation of gene expression across human tissues
Kim-Hellmuth, Sarah, Aguet, François, Oliva, Meritxell, Muñoz-Aguirre, Manuel, Kasela, Silva, Wucher, Valentin, Castel, Stephane E, Hamel, Andrew R, Viñuela, Ana, Roberts, Amy L, Mangul, Serghei, Wen, Xiaoquan, Wang, Gao, Barbeira, Alvaro N, Garrido-Martín, Diego, Nadel, Brian B, Zou, Yuxin, Bonazzola, Rodrigo, Quan, Jie, Brown, Andrew, Martinez-Perez, Angel, Soria, José Manuel, Getz, Gad, Dermitzakis, Emmanouil T, Small, Kerrin S, Stephens, Matthew, Xi, Hualin S, Im, Hae Kyung, Guigó, Roderic, Segrè, Ayellet V, Stranger, Barbara E, Ardlie, Kristin G, Lappalainen, Tuuli
Published in Science (American Association for the Advancement of Science) (11.09.2020)
Published in Science (American Association for the Advancement of Science) (11.09.2020)
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Aggregative trans-eQTL analysis detects trait-specific target gene sets in whole blood
Dutta, Diptavo, He, Yuan, Saha, Ashis, Arvanitis, Marios, Battle, Alexis, Chatterjee, Nilanjan
Published in Nature communications (26.07.2022)
Published in Nature communications (26.07.2022)
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Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation
Elorbany, Reem, Popp, Joshua M, Rhodes, Katherine, Strober, Benjamin J, Barr, Kenneth, Qi, Guanghao, Gilad, Yoav, Battle, Alexis
Published in PLoS genetics (21.01.2022)
Published in PLoS genetics (21.01.2022)
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Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
Battle, Alexis, Mostafavi, Sara, Zhu, Xiaowei, Potash, James B, Weissman, Myrna M, McCormick, Courtney, Haudenschild, Christian D, Beckman, Kenneth B, Shi, Jianxin, Mei, Rui, Urban, Alexander E, Montgomery, Stephen B, Levinson, Douglas F, Koller, Daphne
Published in Genome research (01.01.2014)
Published in Genome research (01.01.2014)
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The impact of rare variation on gene expression across tissues
Li, Xin, Kim, Yungil, Tsang, Emily K., Davis, Joe R., Damani, Farhan N., Chiang, Colby, Hess, Gaelen T., Zappala, Zachary, Strober, Benjamin J., Scott, Alexandra J., Li, Amy, Ganna, Andrea, Bassik, Michael C., Merker, Jason D., Hall, Ira M., Battle, Alexis, Montgomery, Stephen B.
Published in Nature (London) (12.10.2017)
Published in Nature (London) (12.10.2017)
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Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease
Gloudemans, Michael J., Smail, Craig, Eulalio, Tiffany Y., Aguet, François, Xu, Jishu, Kim-Hellmuth, Sarah, Park, YoSon, Scott, Alexandra J., Strober, Benjamin J., Gabriel, Stacey, Meier, Samuel R., Nguyen, Duyen T., Segrè, Ayellet V., Brown, Andrew, Cotter, Daniel J., Cox, Nancy, Dermitzakis, Emmanouil T., Einson, Jonah, Flynn, Elise D., Fresard, Laure, Gamazon, Eric R., Gay, Nicole R., Guigó, Roderic, Hamel, Andrew R., He, Yuan, Hoffman, Paul J., Hormozdiari, Farhad, Hou, Lei, Jo, Brian, Kashin, Seva, Mohammadi, Pejman, Oliva, Meritxell, Parsana, Princy, Sabatti, Chiara, Stranger, Barbara E., Teran, Nicole A., Viñuela, Ana, Wang, Gao, Wright, Fred, Ferreira, Pedro G., Li, Gen, Yeger-Lotem, Esti, Bradbury, Debra, Qi, Liqun, Robinson, Karna, Roche, Nancy V., Tabor, David E., Bridge, Jason, Gillard, Bryan M., Hasz, Richard, Hunter, Marcus, Kopen, Gene, Leinweber, William F., Moser, Michael T., Myer, Kevin, Washington, Michael, Wheeler, Joseph, Rohrer, Daniel C., Valley, Dana R., Branton, Philip A., Sobin, Leslie, Gardiner, Heather M., Mosavel, Maghboeba, Siminoff, Laura A., Flicek, Paul, Haeussler, Maximilian, Juettemann, Thomas, Ruffier, Magali, Sheppard, Dan, Taylor, Kieron, Abell, Nathan S., Akey, Joshua, Chen, Lin, Feinberg, Andrew P., Hansen, Kasper D., Jasmine, Farzana, Jiang, Lihua, Kaul, Rajinder, Kibriya, Muhammad G., Li, Jin Billy, Li, Qin, Lin, Shin, Pierce, Brandon L., Skol, Andrew D., Smith, Kevin S., Snyder, Michael, Stamatoyannopoulos, John, Tang, Hua, Guan, Ping, Little, A. Roger, Nierras, Concepcion R., Rao, Abhi K., Volpi, Simona, Brown, Christopher D., Wen, Xiaoquan, Hall, Ira M., Lappalainen, Tuuli, Im, Hae Kyung, Quertermous, Thomas, Kirkegaard, Karla
Published in Cell (13.05.2021)
Published in Cell (13.05.2021)
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Genome-wide large-scale multi-trait analysis characterizes global patterns of pleiotropy and unique trait-specific variants
Qi, Guanghao, Chhetri, Surya B., Ray, Debashree, Dutta, Diptavo, Battle, Alexis, Bhattacharjee, Samsiddhi, Chatterjee, Nilanjan
Published in Nature communications (14.08.2024)
Published in Nature communications (14.08.2024)
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Sharing and Specificity of Co-expression Networks across 35 Human Tissues
Pierson, Emma, Koller, Daphne, Battle, Alexis, Mostafavi, Sara, Ardlie, Kristin G, Getz, Gad, Wright, Fred A, Kellis, Manolis, Volpi, Simona, Dermitzakis, Emmanouil T
Published in PLoS computational biology (01.05.2015)
Published in PLoS computational biology (01.05.2015)
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Co-expression networks reveal the tissue-specific regulation of transcription and splicing
Saha, Ashis, Kim, Yungil, Gewirtz, Ariel D H, Jo, Brian, Gao, Chuan, McDowell, Ian C, Engelhardt, Barbara E, Battle, Alexis
Published in Genome research (01.11.2017)
Published in Genome research (01.11.2017)
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