Ontology mapping for semantically enabled applications
Harrow, Ian, Balakrishnan, Rama, Jimenez-Ruiz, Ernesto, Jupp, Simon, Lomax, Jane, Reed, Jane, Romacker, Martin, Senger, Christian, Splendiani, Andrea, Wilson, Jabe, Woollard, Peter
Published in Drug discovery today (01.10.2019)
Published in Drug discovery today (01.10.2019)
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Journal Article
YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
Balakrishnan, Rama, Park, Julie, Karra, Kalpana, Hitz, Benjamin C, Binkley, Gail, Hong, Eurie L, Sullivan, Julie, Micklem, Gos, Cherry, J Michael
Published in Database : the journal of biological databases and curation (2012)
Published in Database : the journal of biological databases and curation (2012)
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Journal Article
Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy
Kramer, Michael H., Farré, Jean-Claude, Mitra, Koyel, Yu, Michael Ku, Ono, Keiichiro, Demchak, Barry, Licon, Katherine, Flagg, Mitchell, Balakrishnan, Rama, Cherry, J. Michael, Subramani, Suresh, Ideker, Trey
Published in Molecular cell (16.02.2017)
Published in Molecular cell (16.02.2017)
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Journal Article
Cross-organism analysis using InterMine
Lyne, Rachel, Sullivan, Julie, Butano, Daniela, Contrino, Sergio, Heimbach, Joshua, Hu, Fengyuan, Kalderimis, Alex, Lyne, Mike, N. Smith, Richard, Štěpán, Radek, Balakrishnan, Rama, Binkley, Gail, Harris, Todd, Karra, Kalpana, A. T. Moxon, Sierra, Motenko, Howie, Neuhauser, Steven, Ruzicka, Leyla, Cherry, Mike, Richardson, Joel, Stein, Lincoln, Westerfield, Monte, Worthey, Elizabeth, Micklem, Gos
Published in Genesis (New York, N.Y. : 2000) (01.08.2015)
Published in Genesis (New York, N.Y. : 2000) (01.08.2015)
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Journal Article
Guidelines for the functional annotation of microRNAs using the Gene Ontology
Huntley, Rachael P, Sitnikov, Dmitry, Orlic-Milacic, Marija, Balakrishnan, Rama, D'Eustachio, Peter, Gillespie, Marc E, Howe, Doug, Kalea, Anastasia Z, Maegdefessel, Lars, Osumi-Sutherland, David, Petri, Victoria, Smith, Jennifer R, Van Auken, Kimberly, Wood, Valerie, Zampetaki, Anna, Mayr, Manuel, Lovering, Ruth C
Published in RNA (Cambridge) (01.05.2016)
Published in RNA (Cambridge) (01.05.2016)
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Journal Article
Bioassay protocol metadata annotation: Proposed standards adoption
Balakrishnan, Rama, Berg, Ellen L., Butler, Christopher C., Clark, Alex M., Denker, Sheryl P., Feierberg, Isabella, Harris, Jason, Ikeda, Timothy P., Jeschonek, Samantha, Makarov, Vladimir A., Southan, Christopher, Vanderwall, Dana, Winstanley, Peter
Published in SLAS discovery (01.12.2024)
Published in SLAS discovery (01.12.2024)
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Journal Article
InterMOD: integrated data and tools for the unification of model organism research
Sullivan, Julie, Karra, Kalpana, Moxon, Sierra A. T., Vallejos, Andrew, Motenko, Howie, Wong, J. D., Aleksic, Jelena, Balakrishnan, Rama, Binkley, Gail, Harris, Todd, Hitz, Benjamin, Jayaraman, Pushkala, Lyne, Rachel, Neuhauser, Steven, Pich, Christian, Smith, Richard N., Trinh, Quang, Cherry, J. Michael, Richardson, Joel, Stein, Lincoln, Twigger, Simon, Westerfield, Monte, Worthey, Elizabeth, Micklem, Gos
Published in Scientific reports (08.05.2013)
Published in Scientific reports (08.05.2013)
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Journal Article
Maximizing data value for biopharma through FAIR and quality implementation: FAIR plus Q
Harrow, Ian, Balakrishnan, Rama, Küçük McGinty, Hande, Plasterer, Tom, Romacker, Martin
Published in Drug discovery today (01.05.2022)
Published in Drug discovery today (01.05.2022)
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Journal Article
Comparison of computationally- and manually-assigned Gene Ontology annotations to improve functional characterization of gene products
Costanzo, Maria, Balakrishnan, Rama, Christie, Karen, Hog, Eurie, Park, Julie, Cherry, J. Michael
Published in Nature precedings (25.10.2010)
Published in Nature precedings (25.10.2010)
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Journal Article
AmiGO: online access to ontology and annotation data
Carbon, Seth, Ireland, Amelia, Mungall, Christopher J., Shu, ShengQiang, Marshall, Brad, Lewis, Suzanna
Published in Bioinformatics (15.01.2009)
Published in Bioinformatics (15.01.2009)
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Journal Article
A gene ontology inferred from molecular networks
Dutkowski, Janusz, Kramer, Michael, Surma, Michal A, Balakrishnan, Rama, Cherry, J Michael, Krogan, Nevan J, Ideker, Trey
Published in Nature biotechnology (01.01.2013)
Published in Nature biotechnology (01.01.2013)
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Journal Article
Saccharomyces Genome Database: the genomics resource of budding yeast
Cherry, J. Michael, Hong, Eurie L., Amundsen, Craig, Balakrishnan, Rama, Binkley, Gail, Chan, Esther T., Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Karra, Kalpana, Krieger, Cynthia J., Miyasato, Stuart R., Nash, Rob S., Park, Julie, Skrzypek, Marek S., Simison, Matt, Weng, Shuai, Wong, Edith D.
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
The reference genome sequence of Saccharomyces cerevisiae: then and now
Engel, Stacia R, Dietrich, Fred S, Fisk, Dianna G, Binkley, Gail, Balakrishnan, Rama, Costanzo, Maria C, Dwight, Selina S, Hitz, Benjamin C, Karra, Kalpana, Nash, Robert S, Weng, Shuai, Wong, Edith D, Lloyd, Paul, Skrzypek, Marek S, Miyasato, Stuart R, Simison, Matt, Cherry, J Michael
Published in G3 : genes - genomes - genetics (20.03.2014)
Published in G3 : genes - genomes - genetics (20.03.2014)
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Journal Article
Conference report: Biocuration 2021 Virtual Conference
Quaglia, Federica, Balakrishnan, Rama, Bello, Susan M, Vasilevsky, Nicole
Published in Database : the journal of biological databases and curation (09.04.2022)
Published in Database : the journal of biological databases and curation (09.04.2022)
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Journal Article
Recapitulation of Prognostic Mutational Subtyping Utilizing F1H in GOYA and CAVALLI and the Potential to Highlight Benefit of Targeted Therapy in De Novo DLBCL
Kim, Eugene C, Fan, Jinzhen, Bolen, Christopher R, Bazeos, Alexandra, Jiang, Yanwen, Balasubramanian, Sandhya, Balakrishnan, Rama, Knapp, Andrea, Humphrey, Kathryn, Nielsen, Tina G, Venstrom, Jeffrey M., Hernandez, Genevive, Paulson, Joseph N
Published in Blood (13.11.2019)
Published in Blood (13.11.2019)
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Journal Article
Standardized description of scientific evidence using the Evidence Ontology (ECO)
Chibucos, Marcus C, Mungall, Christopher J, Balakrishnan, Rama, Christie, Karen R, Huntley, Rachael P, White, Owen, Blake, Judith A, Lewis, Suzanna E, Giglio, Michelle
Published in Database : the journal of biological databases and curation (2014)
Published in Database : the journal of biological databases and curation (2014)
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Journal Article