Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
Riley, Robert, Salamov, Asaf A., Brown, Daren W., Nagy, Laszlo G., Floudas, Dimitrios, Held, Benjamin W., Levasseur, Anthony, Lombard, Vincent, Morin, Emmanuelle, Otillar, Robert, Lindquist, Erika A., Sun, Hui, LaButti, Kurt M., Schmutz, Jeremy, Jabbour, Dina, Luoi, Hong, Baker, Scott E., Pisabarro, Antonio G., Walton, Jonathan D., Blanchette, Robert A., Henrissat, Bernard, Martin, Francis, Cullen, Dan, Hibbett, David S., Grigoriev, Igor V.
Published in Proceedings of the National Academy of Sciences - PNAS (08.07.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (08.07.2014)
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The putative protein methyltransferase LAE1 controls cellulase gene expression in Trichoderma reesei
Seiboth, Bernhard, Karimi, Razieh Aghcheh, Phatale, Pallavi A., Linke, Rita, Hartl, Lukas, Sauer, Dominik G., Smith, Kristina M., Baker, Scott E., Freitag, Michael, Kubicek, Christian P.
Published in Molecular microbiology (01.06.2012)
Published in Molecular microbiology (01.06.2012)
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Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis
Pomraning, Kyle R, Wei, Siwei, Karagiosis, Sue A, Kim, Young-Mo, Dohnalkova, Alice C, Arey, Bruce W, Bredeweg, Erin L, Orr, Galya, Metz, Thomas O, Baker, Scott E
Published in PloS one (23.04.2015)
Published in PloS one (23.04.2015)
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New Insight into the Ochratoxin A Biosynthetic Pathway through Deletion of a Nonribosomal Peptide Synthetase Gene in Aspergillus carbonarius
GALLO, Antonia, BRUNO, Kenneth S, SOLFRIZZO, Michele, PERRONE, Giancarlo, MULE, Giuseppina, VISCONTI, Angelo, BAKER, Scott E
Published in Applied and Environmental Microbiology (01.12.2012)
Published in Applied and Environmental Microbiology (01.12.2012)
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
Haridas, Sajeet, González, Jennifer B, Riley, Robert, Koriabine, Maxim, Yan, Mi, Ng, Vivian, Rightmyer, Adriana, Grigoriev, Igor V, Baker, Scott E, Turgeon, B Gillian
Published in mBio (25.04.2023)
Published in mBio (25.04.2023)
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A parts list for fungal cellulosomes revealed by comparative genomics
Haitjema, Charles H., Gilmore, Sean P., Henske, John K., Solomon, Kevin V., de Groot, Randall, Kuo, Alan, Mondo, Stephen J., Salamov, Asaf A., LaButti, Kurt, Zhao, Zhiying, Chiniquy, Jennifer, Barry, Kerrie, Brewer, Heather M., Purvine, Samuel O., Wright, Aaron T., Hainaut, Matthieu, Boxma, Brigitte, van Alen, Theo, Hackstein, Johannes H. P., Henrissat, Bernard, Baker, Scott E., Grigoriev, Igor V., O'Malley, Michelle A.
Published in Nature microbiology (30.05.2017)
Published in Nature microbiology (30.05.2017)
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Dichomitus squalens partially tailors its molecular responses to the composition of solid wood
Daly, Paul, López, Sara Casado, Peng, Mao, Lancefield, Christopher S., Purvine, Samuel O., Kim, Young‐Mo, Zink, Erika M., Dohnalkova, Alice, Singan, Vasanth R., Lipzen, Anna, Dilworth, David, Wang, Mei, Ng, Vivian, Robinson, Errol, Orr, Galya, Baker, Scott E., Bruijnincx, Pieter C. A., Hildén, Kristiina S., Grigoriev, Igor V., Mäkelä, Miia R., de Vries, Ronald P.
Published in Environmental microbiology (01.11.2018)
Published in Environmental microbiology (01.11.2018)
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Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans
Khosravi, Claire, Battaglia, Evy, Kun, Roland S, Dalhuijsen, Sacha, Visser, Jaap, Aguilar-Pontes, María Victoria, Zhou, Miaomiao, Heyman, Heino M, Kim, Young-Mo, Baker, Scott E, de Vries, Ronald P
Published in BMC genomics (22.03.2018)
Published in BMC genomics (22.03.2018)
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Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
Le Crom, Stéphane, Schackwitz, Wendy, Pennacchio, Len, Magnuson, Jon K, Culley, David E, Collett, James R, Martin, Joel, Druzhinina, Irina S, Mathis, Hugues, Monot, Frédéric, Seiboth, Bernhard, Cherry, Barbara, Rey, Michael, Berka, Randy, Kubicek, Christian P, Baker, Scott E, Margeot, Antoine
Published in Proceedings of the National Academy of Sciences - PNAS (22.09.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (22.09.2009)
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Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey
Seidl, Verena, Song, Lifu, Lindquist, Erika, Gruber, Sabine, Koptchinskiy, Alexeji, Zeilinger, Susanne, Schmoll, Monika, Martínez, Pedro, Sun, Jibin, Grigoriev, Igor, Herrera-Estrella, Alfredo, Baker, Scott E, Kubicek, Christian P
Published in BMC genomics (30.11.2009)
Published in BMC genomics (30.11.2009)
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period-1 encodes an ATP-dependent RNA helicase that influences nutritional compensation of the Neurospora circadian clock
Emerson, Jillian M, Bartholomai, Bradley M, Ringelberg, Carol S, Baker, Scott E, Loros, Jennifer J, Dunlap, Jay C
Published in Proceedings of the National Academy of Sciences - PNAS (22.12.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (22.12.2015)
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Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways
Hurley, Jennifer M., Jankowski, Meaghan S., De los Santos, Hannah, Crowell, Alexander M., Fordyce, Samuel B., Zucker, Jeremy D., Kumar, Neeraj, Purvine, Samuel O., Robinson, Errol W., Shukla, Anil, Zink, Erika, Cannon, William R., Baker, Scott E., Loros, Jennifer J., Dunlap, Jay C.
Published in Cell systems (26.12.2018)
Published in Cell systems (26.12.2018)
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Unveiling a classical mutant in the context of the GH3 β-glucosidase family in Neurospora crassa
Zhang, Yuxin, Nada, Basant, Baker, Scott E., Evans, James E., Tian, Chaoguang, Benz, J. Philipp, Tamayo, Elisabeth
Published in AMB Express (05.01.2024)
Published in AMB Express (05.01.2024)
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Increased production of fatty acids and triglycerides in Aspergillus oryzae by enhancing expressions of fatty acid synthesis-related genes
Tamano, Koichi, Bruno, Kenneth S., Karagiosis, Sue A., Culley, David E., Deng, Shuang, Collett, James R., Umemura, Myco, Koike, Hideaki, Baker, Scott E., Machida, Masayuki
Published in Applied microbiology and biotechnology (01.01.2013)
Published in Applied microbiology and biotechnology (01.01.2013)
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Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates the Formation of Some Secondary Metabolites
Niu, Jing, Arentshorst, Mark, Nair, P Deepa S, Dai, Ziyu, Baker, Scott E, Frisvad, Jens C, Nielsen, Kristian F, Punt, Peter J, Ram, Arthur F J
Published in G3 : genes - genomes - genetics (01.01.2016)
Published in G3 : genes - genomes - genetics (01.01.2016)
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