A pan-cancer analysis of synonymous mutations
Sharma, Yogita, Miladi, Milad, Dukare, Sandeep, Boulay, Karine, Caudron-Herger, Maiwen, Groß, Matthias, Backofen, Rolf, Diederichs, Sven
Published in Nature communications (12.06.2019)
Published in Nature communications (12.06.2019)
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pyGenomeTracks: reproducible plots for multivariate genomic datasets
Lopez-Delisle, Lucille, Rabbani, Leily, Wolff, Joachim, Bhardwaj, Vivek, Backofen, Rolf, Grüning, Björn, Ramírez, Fidel, Manke, Thomas
Published in Bioinformatics (Oxford, England) (20.04.2021)
Published in Bioinformatics (Oxford, England) (20.04.2021)
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Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants
Makarova, Kira S, Wolf, Yuri I, Iranzo, Jaime, Shmakov, Sergey A, Alkhnbashi, Omer S, Brouns, Stan J J, Charpentier, Emmanuelle, Cheng, David, Haft, Daniel H, Horvath, Philippe, Moineau, Sylvain, Mojica, Francisco J M, Scott, David, Shah, Shiraz A, Siksnys, Virginijus, Terns, Michael P, Venclovas, Česlovas, White, Malcolm F, Yakunin, Alexander F, Yan, Winston, Zhang, Feng, Garrett, Roger A, Backofen, Rolf, van der Oost, John, Barrangou, Rodolphe, Koonin, Eugene V
Published in Nature reviews. Microbiology (01.02.2020)
Published in Nature reviews. Microbiology (01.02.2020)
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Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization
Wolff, Joachim, Bhardwaj, Vivek, Nothjunge, Stephan, Richard, Gautier, Renschler, Gina, Gilsbach, Ralf, Manke, Thomas, Backofen, Rolf, Ramírez, Fidel, Grüning, Björn A
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
Wright, Patrick R, Georg, Jens, Mann, Martin, Sorescu, Dragos A, Richter, Andreas S, Lott, Steffen, Kleinkauf, Robert, Hess, Wolfgang R, Backofen, Rolf
Published in Nucleic acids research (01.07.2014)
Published in Nucleic acids research (01.07.2014)
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LocARNA-P: accurate boundary prediction and improved detection of structural RNAs
Will, Sebastian, Joshi, Tejal, Hofacker, Ivo L, Stadler, Peter F, Backofen, Rolf
Published in RNA (Cambridge) (01.05.2012)
Published in RNA (Cambridge) (01.05.2012)
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Journal Article
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
Gilsbach, Ralf, Schwaderer, Martin, Preissl, Sebastian, Grüning, Björn A, Kranzhöfer, David, Schneider, Pedro, Nührenberg, Thomas G, Mulero-Navarro, Sonia, Weichenhan, Dieter, Braun, Christian, Dreßen, Martina, Jacobs, Adam R, Lahm, Harald, Doenst, Torsten, Backofen, Rolf, Krane, Markus, Gelb, Bruce D, Hein, Lutz
Published in Nature communications (26.01.2018)
Published in Nature communications (26.01.2018)
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Journal Article
Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease
Gilsbach, Ralf, Preissl, Sebastian, Grüning, Björn A, Schnick, Tilman, Burger, Lukas, Benes, Vladimir, Würch, Andreas, Bönisch, Ulrike, Günther, Stefan, Backofen, Rolf, Fleischmann, Bernd K, Schübeler, Dirk, Hein, Lutz
Published in Nature communications (22.10.2014)
Published in Nature communications (22.10.2014)
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Journal Article
The RNA-binding protein ARPP21 controls dendritic branching by functionally opposing the miRNA it hosts
Rehfeld, Frederick, Maticzka, Daniel, Grosser, Sabine, Knauff, Pina, Eravci, Murat, Vida, Imre, Backofen, Rolf, Wulczyn, F Gregory
Published in Nature communications (26.03.2018)
Published in Nature communications (26.03.2018)
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Journal Article
GraphClust: alignment-free structural clustering of local RNA secondary structures
Heyne, Steffen, Costa, Fabrizio, Rose, Dominic, Backofen, Rolf
Published in Bioinformatics (Oxford, England) (15.06.2012)
Published in Bioinformatics (Oxford, England) (15.06.2012)
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Journal Article
Pre-mRNA secondary structures influence exon recognition
Hiller, Michael, Zhang, Zhaiyi, Backofen, Rolf, Stamm, Stefan
Published in PLoS genetics (01.11.2007)
Published in PLoS genetics (01.11.2007)
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Journal Article
Comparative genomics boosts target prediction for bacterial small RNAs
Wright, Patrick R., Richter, Andreas S., Papenfort, Kai, Mann, Martin, Vogel, Jörg, Hess, Wolfgang R., Backofen, Rolf, Georg, Jens
Published in Proceedings of the National Academy of Sciences - PNAS (10.09.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (10.09.2013)
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