Biologically informed deep learning for explainable epigenetic clocks
Prosz, Aurel, Pipek, Orsolya, Börcsök, Judit, Palla, Gergely, Szallasi, Zoltan, Spisak, Sandor, Csabai, István
Published in Scientific reports (15.01.2024)
Published in Scientific reports (15.01.2024)
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Journal Article
Hierarchy and control of ageing-related methylation networks
Palla, Gergely, Pollner, Péter, Börcsök, Judit, Major, András, Molnár, Béla, Csabai, István
Published in PLoS computational biology (01.09.2021)
Published in PLoS computational biology (01.09.2021)
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Journal Article
Nucleotide excision repair deficiency is a targetable therapeutic vulnerability in clear cell renal cell carcinoma
Prosz, Aurel, Duan, Haohui, Tisza, Viktoria, Sahgal, Pranshu, Topka, Sabine, Klus, Gregory T, Börcsök, Judit, Sztupinszki, Zsofia, Hanlon, Timothy, Diossy, Miklos, Vizkeleti, Laura, Stormoen, Dag Rune, Csabai, Istvan, Pappot, Helle, Vijai, Joseph, Offit, Kenneth, Ried, Thomas, Sethi, Nilay, Mouw, Kent W, Spisak, Sandor, Pathania, Shailja, Szallasi, Zoltan
Published in Scientific reports (23.11.2023)
Published in Scientific reports (23.11.2023)
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Journal Article
Identification of a Synthetic Lethal Relationship between Nucleotide Excision Repair Deficiency and Irofulven Sensitivity in Urothelial Cancer
Börcsök, Judit, Sztupinszki, Zsofia, Bekele, Raie, Gao, Sizhi P, Diossy, Miklos, Samant, Amruta S, Dillon, Kasia M, Tisza, Viktoria, Spisák, Sándor, Rusz, Orsolya, Csabai, Istvan, Pappot, Helle, Frazier, Zoë J, Konieczkowski, David J, Liu, David, Vasani, Naresh, Rodrigues, James A, Solit, David B, Hoffman-Censits, Jean H, Plimack, Elizabeth R, Rosenberg, Jonathan E, Lazaro, Jean-Bernard, Taplin, Mary-Ellen, Iyer, Gopa, Brunak, Søren, Lozsa, Rita, Van Allen, Eliezer M, Szüts, Dávid, Mouw, Kent W, Szallasi, Zoltan
Published in Clinical cancer research (01.04.2021)
Published in Clinical cancer research (01.04.2021)
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Journal Article
Mutational signature-based identification of DNA repair deficient gastroesophageal adenocarcinomas for therapeutic targeting
Prosz, Aurel, Sahgal, Pranshu, Huffman, Brandon M, Sztupinszki, Zsofia, Morris, Clare X, Chen, David, Börcsök, Judit, Diossy, Miklos, Tisza, Viktoria, Spisak, Sandor, Likasitwatanakul, Pornlada, Rusz, Orsolya, Csabai, Istvan, Cecchini, Michael, Baca, Yasmine, Elliott, Andrew, Enzinger, Peter, Singh, Harshabad, Ubellaker, Jessalyn, Lazaro, Jean-Bernard, Cleary, James M, Szallasi, Zoltan, Sethi, Nilay S
Published in NPJ precision oncology (08.04.2024)
Published in NPJ precision oncology (08.04.2024)
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Journal Article
Author Correction: Mutational signature-based identification of DNA repair deficient gastroesophageal adenocarcinomas for therapeutic targeting
Prosz, Aurel, Sahgal, Pranshu, Huffman, Brandon M, Sztupinszki, Zsofia, Morris, Clare X, Chen, David, Börcsök, Judit, Diossy, Miklos, Tisza, Viktoria, Spisak, Sandor, Likasitwatanakul, Pornlada, Rusz, Orsolya, Csabai, Istvan, Cecchini, Michael, Baca, Yasmine, Elliott, Andrew, Enzinger, Peter, Singh, Harshabad, Ubellaker, Jessalyn, Lazaro, Jean-Bernard, Cleary, James M, Szallasi, Zoltan, Sethi, Nilay S
Published in NPJ precision oncology (06.05.2024)
Published in NPJ precision oncology (06.05.2024)
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Journal Article
Frequent CHD1 deletions in prostate cancers of African American men is associated with rapid disease progression
Diossy, Miklos, Tisza, Viktoria, Li, Hua, Sahgal, Pranshu, Zhou, Jia, Sztupinszki, Zsofia, Young, Denise, Nousome, Darryl, Kuo, Claire, Jiang, Jiji, Chen, Yongmei, Ebner, Reinhard, Sesterhenn, Isabell A., Moncur, Joel T., Chesnut, Gregory T., Petrovics, Gyorgy, Klus, Gregory T., Valcz, Gabor, Nuzzo, Pier Vitale, Ribli, Dezso, Börcsök, Judit, Prosz, Aurel, Krzystanek, Marcin, Ried, Thomas, Szuts, David, Rizwan, Kinza, Kaochar, Salma, Pathania, Shailja, D’Andrea, Alan D., Csabai, Istvan, Srivastava, Shiv, Freedman, Matthew L., Dobi, Albert, Spisak, Sandor, Szallasi, Zoltan
Published in NPJ precision oncology (19.09.2024)
Published in NPJ precision oncology (19.09.2024)
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Journal Article
Detection of Molecular Signatures of Homologous Recombination Deficiency in Bladder Cancer
Börcsök, Judit, Diossy, Miklos, Sztupinszki, Zsofia, Prosz, Aurel, Tisza, Viktoria, Spisak, Sandor, Rusz, Orsolya, Stormoen, Dag R, Pappot, Helle, Csabai, Istvan, Brunak, Søren, Mouw, Kent W, Szallasi, Zoltan
Published in Clinical cancer research (01.07.2021)
Published in Clinical cancer research (01.07.2021)
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Journal Article
Genetic Determinants of Somatic Selection of Mutational Processes in 3,566 Human Cancers
Guo, Jintao, Zhou, Ying, Xu, Chaoqun, Chen, Qinwei, Sztupinszki, Zsófia, Börcsök, Judit, Xu, Canqiang, Ye, Feng, Tang, Weiwei, Kang, Jiapeng, Yang, Lu, Zhong, Jiaxin, Zhong, Taoling, Hu, Tianhui, Yu, Rongshan, Szallasi, Zoltan, Deng, Xianming, Li, Qiyuan
Published in Cancer research (Chicago, Ill.) (15.08.2021)
Published in Cancer research (Chicago, Ill.) (15.08.2021)
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Journal Article
RAF1 amplification drives a subset of bladder tumors and confers sensitivity to MAPK-directed therapeutics
Bekele, Raie T, Samant, Amruta S, Nassar, Amin H, So, Jonathan, Garcia, Elizabeth P, Curran, Catherine R, Hwang, Justin H, Mayhew, David L, Nag, Anwesha, Thorner, Aaron R, Börcsök, Judit, Sztupinszki, Zsofia, Pan, Chong-Xian, Bellmunt, Joaquim, Kwiatkowski, David J, Sonpavde, Guru P, Van Allen, Eliezer M, Mouw, Kent W
Published in The Journal of clinical investigation (15.11.2021)
Published in The Journal of clinical investigation (15.11.2021)
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Journal Article
A subset of lung cancer cases shows robust signs of homologous recombination deficiency associated genomic mutational signatures
Diossy, Miklos, Sztupinszki, Zsofia, Borcsok, Judit, Krzystanek, Marcin, Tisza, Viktoria, Spisak, Sandor, Rusz, Orsolya, Timar, Jozsef, Csabai, István, Fillinger, Janos, Moldvay, Judit, Pedersen, Anders Gorm, Szuts, David, Szallasi, Zoltan
Published in NPJ precision oncology (18.06.2021)
Published in NPJ precision oncology (18.06.2021)
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Journal Article
ATM deficiency confers specific therapeutic vulnerabilities in bladder cancer
Zhou, Yuzhen, Börcsök, Judit, Adib, Elio, Kamran, Sophia C, Neil, Alexander J, Stawiski, Konrad, Freeman, Dory, Stormoen, Dag Rune, Sztupinszki, Zsofia, Samant, Amruta, Nassar, Amin, Bekele, Raie T, Hanlon, Timothy, Valentine, Henkel, Epstein, Ilana, Sharma, Bijaya, Felt, Kristen, Abbosh, Philip, Wu, Chin-Lee, Efstathiou, Jason A, Miyamoto, David T, Anderson, William, Szallasi, Zoltan, Mouw, Kent W
Published in Science advances (24.11.2023)
Published in Science advances (24.11.2023)
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Journal Article
Detection of Molecular Signatures of Homologous Recombination Deficiency in Prostate Cancer with or without BRCA1/2 Mutations
Sztupinszki, Zsofia, Diossy, Miklos, Krzystanek, Marcin, Borcsok, Judit, Pomerantz, Mark M, Tisza, Viktoria, Spisak, Sandor, Rusz, Orsolya, Csabai, István, Freedman, Matthew L, Szallasi, Zoltan
Published in Clinical cancer research (01.06.2020)
Published in Clinical cancer research (01.06.2020)
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Journal Article
Comparative Assessment of Diagnostic Homologous Recombination Deficiency-Associated Mutational Signatures in Ovarian Cancer
Sztupinszki, Zsofia, Diossy, Miklos, Borcsok, Judit, Prosz, Aurel, Cornelius, Nanna, Kjeldsen, Maj K, Mirza, Mansoor R, Szallasi, Zoltan
Published in Clinical cancer research (15.10.2021)
Published in Clinical cancer research (15.10.2021)
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Journal Article
Strand Orientation Bias Detector to determine the probability of FFPE sequencing artifacts
Diossy, Miklos, Sztupinszki, Zsofia, Krzystanek, Marcin, Borcsok, Judit, Eklund, Aron C, Csabai, István, Pedersen, Anders Gorm, Szallasi, Zoltan
Published in Briefings in bioinformatics (05.11.2021)
Published in Briefings in bioinformatics (05.11.2021)
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Journal Article
Increased frequency of CHD1 deletions in prostate cancers of African American men is associated with rapid disease progression without inducing homologous recombination deficiency
Szallasi, Zoltan, Diossy, Miklos, Tisza, Viktoria, Li, Hua, Sahgal, Pranshu, Zhou, Jia, Sztupinszki, Zsofia, Young, Denise, Nuosome, Darryl, Kuo, Claire, Jiang, Jiji, Chen, Yongmei, Ebner, Reinhard, Sesterhenn, Isabell, Moncur, Joel, Chesnut, Gregory, Petrovics, Gyorgy, T Klus, Gregory, Valcz, Gábor, Nuzzo, Pier, Ribli, Dezso, Börcsök, Judit, Prósz, Aurél, Krzystanek, Marcin, Ried, Thomas, Szüts, Dávid, Rizwan, Kinza, Kaochar, Salma, Pathania, Shailja, D'Andrea, Alan, Csabai, István, Srivastava, Shib, Freedman, Matthew, Dobi, Albert, Spisak, Sandor
Published in Research square (01.04.2024)
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Published in Research square (01.04.2024)
Journal Article
Nucleotide excision repair deficiency is a targetable therapeutic vulnerability in clear cell renal cell carcinoma
Prosz, Aurel, Duan, Haohui, Tisza, Viktoria, Sahgal, Pranshu, Topka, Sabine, Klus, Gregory T, Börcsök, Judit, Sztupinszki, Zsofia, Hanlon, Timothy, Diossy, Miklos, Vizkeleti, Laura, Stormoen, Dag Rune, Csabai, Istvan, Pappot, Helle, Vijai, Joseph, Offit, Kenneth, Ried, Thomas, Sethi, Nilay, Mouw, Kent W, Spisak, Sandor, Pathania, Shailja, Szallasi, Zoltan
Published in bioRxiv : the preprint server for biology (07.02.2023)
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Published in bioRxiv : the preprint server for biology (07.02.2023)
Journal Article
Nucleotide excision repair deficiency is a targetable therapeutic vulnerability in clear cell renal cell carcinoma
Prosz, Aurel, Duan, Haohui, Tisza, Viktoria, Sahgal, Pranshu, Topka, Sabine, Tklus, Gregory, Borscok, Judit, Sztupinszki, Zsofia, Hanlon, Timothy, Diossy, Miklos, Vizkeleti, Laura, Stormoen, Dag Rune, Csabai, Istvan, Pappot, Helle, Vijai, Joseph, Offit, Kenneth, Ried, Thomas, Sethi, Nilay, Mouw, Kent W, Spisak, Sandor, Pathania, Shailja, Szallasi, Zoltan
Published in bioRxiv (07.02.2023)
Published in bioRxiv (07.02.2023)
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Paper
METHOD FOR TREATING CANCER
MOUW, Kent William, SZALLASI, Zoltan, SZTUPINSZKI, Zsofia, DIOSSY, Miklos, BORCSOK, Judit
Year of Publication 27.04.2023
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Year of Publication 27.04.2023
Patent
METHOD FOR TREATING CANCER
MOUW, Kent William, SZALLASI, Zoltan, SZTUPINSZKI, Zsofia, DIOSSY, Miklos, BORCSOK, Judit
Year of Publication 30.09.2021
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Year of Publication 30.09.2021
Patent