The asparagus genome sheds light on the origin and evolution of a young Y chromosome
Harkess, Alex, Zhou, Jinsong, Xu, Chunyan, Bowers, John E., Van der Hulst, Ron, Ayyampalayam, Saravanaraj, Mercati, Francesco, Riccardi, Paolo, McKain, Michael R., Kakrana, Atul, Tang, Haibao, Ray, Jeremy, Groenendijk, John, Arikit, Siwaret, Mathioni, Sandra M., Nakano, Mayumi, Shan, Hongyan, Telgmann-Rauber, Alexa, Kanno, Akira, Yue, Zhen, Chen, Haixin, Li, Wenqi, Chen, Yanling, Xu, Xiangyang, Zhang, Yueping, Luo, Shaochun, Chen, Helong, Gao, Jianming, Mao, Zichao, Pires, J. Chris, Luo, Meizhong, Kudrna, Dave, Wing, Rod A., Meyers, Blake C., Yi, Kexian, Kong, Hongzhi, Lavrijsen, Pierre, Sunseri, Francesco, Falavigna, Agostino, Ye, Yin, Leebens-Mack, James H., Chen, Guangyu
Published in Nature communications (02.11.2017)
Published in Nature communications (02.11.2017)
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Journal Article
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)
Carpenter, Eric J, Matasci, Naim, Ayyampalayam, Saravanaraj, Wu, Shuangxiu, Sun, Jing, Yu, Jun, Jimenez Vieira, Fabio Rocha, Bowler, Chris, Dorrell, Richard G, Gitzendanner, Matthew A, Li, Ling, Du, Wensi, K. Ullrich, Kristian, Wickett, Norman J, Barkmann, Todd J, Barker, Michael S, Leebens-Mack, James H, Wong, Gane Ka-Shu
Published in Gigascience (01.10.2019)
Published in Gigascience (01.10.2019)
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Journal Article
Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes
Timilsena, Prakash Raj, Wafula, Eric K, Barrett, Craig F, Ayyampalayam, Saravanaraj, McNeal, Joel R, Rentsch, Jeremy D, McKain, Michael R, Heyduk, Karolina, Harkess, Alex, Villegente, Matthieu, Conran, John G, Illing, Nicola, Fogliani, Bruno, Ané, Cécile, Pires, J Chris, Davis, Jerrold I, Zomlefer, Wendy B, Stevenson, Dennis W, Graham, Sean W, Givnish, Thomas J, Leebens-Mack, James, dePamphilis, Claude W
Published in Frontiers in plant science (22.11.2022)
Published in Frontiers in plant science (22.11.2022)
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Journal Article
Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae)
McKain, Michael R., Wickett, Norman, Zhang, Yeting, Ayyampalayam, Saravanaraj, McCombie, W. Richard, Chase, Mark W., Pires, J. Chris, dePamphilis, Claude W., Leebens-Mack, Jim
Published in American journal of botany (01.02.2012)
Published in American journal of botany (01.02.2012)
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Journal Article
Phylogenomic analysis of Ranunculales resolves branching events across the order
Lane, Amanda K, Augustin, Megan M, Ayyampalayam, Saravanaraj, Plant, Alastair, Gleissberg, Stefan, Di Stilio, Verónica S, Depamphilis, Claude W, Wong, Gane Ka-Shu, Kutchan, Toni M, Leebens-Mack, James H
Published in Botanical journal of the Linnean Society (31.05.2018)
Published in Botanical journal of the Linnean Society (31.05.2018)
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Journal Article
A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure
Zuccolo, Andrea, Bowers, John E, Estill, James C, Xiong, Zhiyong, Luo, Meizhong, Sebastian, Aswathy, Goicoechea, José Luis, Collura, Kristi, Yu, Yeisoo, Jiao, Yuannian, Duarte, Jill, Tang, Haibao, Ayyampalayam, Saravanaraj, Rounsley, Steve, Kudrna, Dave, Paterson, Andrew H, Pires, J Chris, Chanderbali, Andre, Soltis, Douglas E, Chamala, Srikar, Barbazuk, Brad, Soltis, Pamela S, Albert, Victor A, Ma, Hong, Mandoli, Dina, Banks, Jody, Carlson, John E, Tomkins, Jeffrey, dePamphilis, Claude W, Wing, Rod A, Leebens-Mack, Jim
Published in Genome biology (27.05.2011)
Published in Genome biology (27.05.2011)
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Journal Article
Phylogenomic reconstruction of transcriptome data confirms the basal position of Prodoxidae moths within the order Lepidoptera
Darwell, Clive, Ayyampalayam, Saravanaraj, Leebens-Mack, James, Smith, Chris, Segraves, Kari, Althoff, David
Published in Arthropod systematics & phylogeny (01.01.2018)
Published in Arthropod systematics & phylogeny (01.01.2018)
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Journal Article
In Silico Prediction of Ionization Constants of Drugs
Lee, Pil H, Ayyampalayam, Saravanaraj N, Carreira, Lionel A, Shalaeva, Marina, Bhattachar, Shobha, Coselmon, Rachel, Poole, Salwa, Gifford, Eric, Lombardo, Franco
Published in Molecular pharmaceutics (01.07.2007)
Published in Molecular pharmaceutics (01.07.2007)
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Journal Article
One thousand plant transcriptomes and the phylogenomics of green plants
Leebens-Mack, James H, Barker, Michael S, Carpenter, Eric J, Deyholos, Michael K, Gitzendanner, Matthew A, Graham, Sean W, Grosse, Ivo
Published in Nature (London) (01.10.2019)
Published in Nature (London) (01.10.2019)
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Journal Article
Phylotranscriptomic analysis of the origin and early diversification of land plants
Wickett, Norman J, Mirarab, Siavash, Nguyen, Nam, Warnow, Tandy, Carpenter, Eric, Matasci, Naim, Ayyampalayam, Saravanaraj, Barker, Michael S, Burleigh, J Gordon, Gitzendanner, Matthew A, Ruhfel, Brad R, Wafula, Eric, Der, Joshua P, Graham, Sean W, Mathews, Sarah, Melkonian, Michael, Soltis, Douglas E, Soltis, Pamela S, Miles, Nicholas W, Rothfels, Carl J, Pokorny, Lisa, Shaw, A Jonathan, DeGironimo, Lisa, Stevenson, Dennis W, Surek, Barbara, Villarreal, Juan Carlos, Roure, Béatrice, Philippe, Hervé, dePamphilis, Claude W, Chen, Tao, Deyholos, Michael K, Baucom, Regina S, Kutchan, Toni M, Augustin, Megan M, Wang, Jun, Zhang, Yong, Tian, Zhijian, Yan, Zhixiang, Wu, Xiaolei, Sun, Xiao, Wong, Gane Ka-Shu, Leebens-Mack, James
Published in Proceedings of the National Academy of Sciences - PNAS (11.11.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (11.11.2014)
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Journal Article
Ancestral polyploidy in seed plants and angiosperms
Jiao, Yuannian, Wickett, Norman J., Ayyampalayam, Saravanaraj, Chanderbali, André S., Landherr, Lena, Ralph, Paula E., Tomsho, Lynn P., Hu, Yi, Liang, Haiying, Soltis, Pamela S., Soltis, Douglas E., Clifton, Sandra W., Schlarbaum, Scott E., Schuster, Stephan C., Ma, Hong, Leebens-Mack, Jim, dePamphilis, Claude W.
Published in Nature (London) (05.05.2011)
Published in Nature (London) (05.05.2011)
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Journal Article
The Amborella Genome and the Evolution of Flowering Plants
Albert, Victor A, Barbazuk, WBradley, dePamphilis, Claude W, Der, Joshua P, Leebens-Mack, James, Ma, Hong, Palmer, Jeffrey D, Rounsley, Steve, Sankoff, David, Schuster, Stephan C, Soltis, Douglas E, Soltis, Pamela S, Wessler, Susan R, Wing, Rod A, Ammiraju, Jetty SS, Chamala, Srikar, Chanderbali, Andre S, Determann, Ronald, Ralph, Paula, Talag, Jason, Tomsho, Lynn, Walts, Brandon, Wanke, Stefan, Chang, Tien-Hao, Lan, Tianying, Arikit, Siwaret, Axtell, Michael J, Ayyampalayam, Saravanaraj, Burnette, James M, De Paoli, Emanuele, et. al
Published in Science (American Association for the Advancement of Science) (20.12.2013)
Published in Science (American Association for the Advancement of Science) (20.12.2013)
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Journal Article
genome triplication associated with early diversification of the core eudicots
Jiao, Yuannian, Leebens-Mack, Jim, Ayyampalayam, Saravanaraj, Bowers, John E, McKain, Michael R, McNeal, Joel, Rolf, Megan, Ruzicka, Daniel R, Wafula, Eric, Wickett, Norman J, Wu, Xiaolei, Zhang, Yong, Wang, Jun, Zhang, Yeting, Carpenter, Eric J, Deyholos, Michael K, Kutchan, Toni M, Chanderbali, Andre S, Soltis, Pamela S, Stevenson, Dennis W, McCombie, Richard, Pires, J Chris, Wong, Gane Ka-Shu, Soltis, Douglas E, dePamphilis, Claude W
Published in Genome biology (26.01.2012)
Published in Genome biology (26.01.2012)
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Journal Article
Identification of Strain-Specific Sequences That Distinguish a Mycoplasma gallisepticum Vaccine Strain from Field Isolates
Ricketts, Camir, Pickler, Larissa, Maurer, John, Ayyampalayam, Saravanaraj, García, Maricarmen, Ferguson-Noel, Naola M
Published in Journal of clinical microbiology (01.01.2017)
Published in Journal of clinical microbiology (01.01.2017)
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Journal Article
Data access for the 1,000 Plants (1KP) project
Matasci, Naim, Hung, Ling-Hong, Yan, Zhixiang, Carpenter, Eric J, Wickett, Norman J, Mirarab, Siavash, Nguyen, Nam, Warnow, Tandy, Ayyampalayam, Saravanaraj, Barker, Michael, Burleigh, J Gordon, Gitzendanner, Matthew A, Wafula, Eric, Der, Joshua P, dePamphilis, Claude W, Roure, Béatrice, Philippe, Hervé, Ruhfel, Brad R, Miles, Nicholas W, Graham, Sean W, Mathews, Sarah, Surek, Barbara, Melkonian, Michael, Soltis, Douglas E, Soltis, Pamela S, Rothfels, Carl, Pokorny, Lisa, Shaw, Jonathan A, DeGironimo, Lisa, Stevenson, Dennis W, Villarreal, Juan Carlos, Chen, Tao, Kutchan, Toni M, Rolf, Megan, Baucom, Regina S, Deyholos, Michael K, Samudrala, Ram, Tian, Zhijian, Wu, Xiaolei, Sun, Xiao, Zhang, Yong, Wang, Jun, Leebens-Mack, Jim, Wong, Gane Ka-Shu
Published in Gigascience (27.10.2014)
Published in Gigascience (27.10.2014)
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Journal Article
A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales
McKain, Michael R, Tang, Haibao, McNeal, Joel R, Ayyampalayam, Saravanaraj, Davis, Jerrold I, dePamphilis, Claude W, Givnish, Thomas J, Pires, J Chris, Stevenson, Dennis Wm, Leebens-Mack, James H
Published in Genome biology and evolution (21.04.2016)
Published in Genome biology and evolution (21.04.2016)
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Journal Article
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages
Timilsena, Prakash Raj, Barrett, Craig F, Piñeyro-Nelson, Alma, Wafula, Eric K, Ayyampalayam, Saravanaraj, McNeal, Joel R, Yukawa, Tomohisa, Givnish, Thomas J, Graham, Sean W, Pires, J Chris, Davis, Jerrold I, Ané, Cécile, Stevenson, Dennis W, Leebens-Mack, Jim, Martínez-Salas, Esteban, Álvarez-Buylla, Elena R, dePamphilis, Claude W
Published in Genome biology and evolution (04.01.2023)
Published in Genome biology and evolution (04.01.2023)
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Journal Article
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
D’Hont, Angélique, Denoeud, France, Aury, Jean-Marc, Baurens, Franc-Christophe, Carreel, Françoise, Garsmeur, Olivier, Noel, Benjamin, Bocs, Stéphanie, Droc, Gaëtan, Rouard, Mathieu, Da Silva, Corinne, Jabbari, Kamel, Cardi, Céline, Poulain, Julie, Souquet, Marlène, Labadie, Karine, Jourda, Cyril, Lengellé, Juliette, Rodier-Goud, Marguerite, Alberti, Adriana, Bernard, Maria, Correa, Margot, Ayyampalayam, Saravanaraj, Mckain, Michael R., Leebens-Mack, Jim, Burgess, Diane, Freeling, Mike, Mbéguié-A-Mbéguié, Didier, Chabannes, Matthieu, Wicker, Thomas, Panaud, Olivier, Barbosa, Jose, Hribova, Eva, Heslop-Harrison, Pat, Habas, Rémy, Rivallan, Ronan, Francois, Philippe, Poiron, Claire, Kilian, Andrzej, Burthia, Dheema, Jenny, Christophe, Bakry, Frédéric, Brown, Spencer, Guignon, Valentin, Kema, Gert, Dita, Miguel, Waalwijk, Cees, Joseph, Steeve, Dievart, Anne, Jaillon, Olivier, Leclercq, Julie, Argout, Xavier, Lyons, Eric, Almeida, Ana, Jeridi, Mouna, Dolezel, Jaroslav, Roux, Nicolas, Risterucci, Ange-Marie, Weissenbach, Jean, Ruiz, Manuel, Glaszmann, Jean-Christophe, Quétier, Francis, Yahiaoui, Nabila, Wincker, Patrick
Published in Nature (London) (09.08.2012)
Published in Nature (London) (09.08.2012)
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