Impact of feature harmonization on radiogenomics analysis: Prediction of EGFR and KRAS mutations from non-small cell lung cancer PET/CT images
Shiri, Isaac, Amini, Mehdi, Nazari, Mostafa, Hajianfar, Ghasem, Haddadi Avval, Atlas, Abdollahi, Hamid, Oveisi, Mehrdad, Arabi, Hossein, Rahmim, Arman, Zaidi, Habib
Published in Computers in biology and medicine (01.03.2022)
Published in Computers in biology and medicine (01.03.2022)
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Journal Article
Overall Survival Prediction in Renal Cell Carcinoma Patients Using Computed Tomography Radiomic and Clinical Information
Khodabakhshi, Zahra, Amini, Mehdi, Mostafaei, Shayan, Haddadi Avval, Atlas, Nazari, Mostafa, Oveisi, Mehrdad, Shiri, Isaac, Zaidi, Habib
Published in Journal of digital imaging (01.10.2021)
Published in Journal of digital imaging (01.10.2021)
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Journal Article
Time-to-event overall survival prediction in glioblastoma multiforme patients using magnetic resonance imaging radiomics
Hajianfar, Ghasem, Haddadi Avval, Atlas, Hosseini, Seyyed Ali, Nazari, Mostafa, Oveisi, Mehrdad, Shiri, Isaac, Zaidi, Habib
Published in Radiologia medica (01.12.2023)
Published in Radiologia medica (01.12.2023)
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Journal Article
Machine learning based readmission and mortality prediction in heart failure patients
Sabouri, Maziar, Rajabi, Ahmad Bitarafan, Hajianfar, Ghasem, Gharibi, Omid, Mohebi, Mobin, Avval, Atlas Haddadi, Naderi, Nasim, Shiri, Isaac
Published in Scientific reports (31.10.2023)
Published in Scientific reports (31.10.2023)
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Journal Article
High-dimensional multinomial multiclass severity scoring of COVID-19 pneumonia using CT radiomics features and machine learning algorithms
Shiri, Isaac, Mostafaei, Shayan, Haddadi Avval, Atlas, Salimi, Yazdan, Sanaat, Amirhossein, Akhavanallaf, Azadeh, Arabi, Hossein, Rahmim, Arman, Zaidi, Habib
Published in Scientific reports (01.09.2022)
Published in Scientific reports (01.09.2022)
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Journal Article
The effect of harmonization on the variability of PET radiomic features extracted using various segmentation methods
Hosseini, Seyyed Ali, Shiri, Isaac, Ghaffarian, Pardis, Hajianfar, Ghasem, Avval, Atlas Haddadi, Seyfi, Milad, Servaes, Stijn, Rosa-Neto, Pedro, Zaidi, Habib, Ay, Mohammad Reza
Published in Annals of nuclear medicine (01.07.2024)
Published in Annals of nuclear medicine (01.07.2024)
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Journal Article
Myocardial Function Prediction After Coronary Artery Bypass Grafting Using MRI Radiomic Features and Machine Learning Algorithms
Arian, Fatemeh, Amini, Mehdi, Mostafaei, Shayan, Rezaei Kalantari, Kiara, Haddadi Avval, Atlas, Shahbazi, Zahra, Kasani, Kianosh, Bitarafan Rajabi, Ahmad, Chatterjee, Saikat, Oveisi, Mehrdad, Shiri, Isaac, Zaidi, Habib
Published in Journal of digital imaging (01.12.2022)
Published in Journal of digital imaging (01.12.2022)
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Journal Article
Medical Image Segmentation Review: The Success of U-Net
Azad, Reza, Aghdam, Ehsan Khodapanah, Rauland, Amelie, Jia, Yiwei, Avval, Atlas Haddadi, Bozorgpour, Afshin, Karimijafarbigloo, Sanaz, Cohen, Joseph Paul, Adeli, Ehsan, Merhof, Dorit
Published in IEEE transactions on pattern analysis and machine intelligence (21.08.2024)
Published in IEEE transactions on pattern analysis and machine intelligence (21.08.2024)
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Journal Article
Differential privacy preserved federated learning for prognostic modeling in COVID‐19 patients using large multi‐institutional chest CT dataset
Shiri, Isaac, Salimi, Yazdan, Sirjani, Nasim, Razeghi, Behrooz, Bagherieh, Sara, Pakbin, Masoumeh, Mansouri, Zahra, Hajianfar, Ghasem, Avval, Atlas Haddadi, Askari, Dariush, Ghasemian, Mohammadreza, Sandoughdaran, Saleh, Sohrabi, Ahmad, Sadati, Elham, Livani, Somayeh, Iranpour, Pooya, Kolahi, Shahriar, Khosravi, Bardia, Bijari, Salar, Sayfollahi, Sahar, Atashzar, Mohammad Reza, Hasanian, Mohammad, Shahhamzeh, Alireza, Teimouri, Arash, Goharpey, Neda, Shirzad‐Aski, Hesamaddin, Karimi, Jalal, Radmard, Amir Reza, Rezaei‐Kalantari, Kiara, Oghli, Mostafa Ghelich, Oveisi, Mehrdad, Vafaei Sadr, Alireza, Voloshynovskiy, Slava, Zaidi, Habib
Published in Medical physics (Lancaster) (01.07.2024)
Published in Medical physics (Lancaster) (01.07.2024)
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Journal Article
Thyroidiomics: An Automated Pipeline for Segmentation and Classification of Thyroid Pathologies from Scintigraphy Images
Sabouri, Maziar, Ahamed, Shadab, Asadzadeh, Azin, Avval, Atlas Haddadi, Bagheri, Soroush, Arabi, Mohsen, Zakavi, Seyed Rasoul, Askari, Emran, Rasouli, Ali, Aghaee, Atena, Sehati, Mohaddese, Yousefirizi, Fereshteh, Uribe, Carlos, Hajianfar, Ghasem, Zaidi, Habib, Rahmim, Arman
Year of Publication 14.07.2024
Year of Publication 14.07.2024
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Journal Article
On the Removal of Inter/Intra Observer Variability of PET Radiomics Features
Shiri, Isaac, Amini, Mehdi, Hajianfar, Ghasem, Avval, Atlas Haddadi, Sanaat, Amirhossein, Arabi, Hossein, Zaidi, Habib
Published in 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (16.10.2021)
Published in 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (16.10.2021)
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Conference Proceeding
Holistic MRI-based Prognostic Model Development Using Genomic and Histopathologic Features in Glioblastoma Patients
Avval, Atlas Haddadi, Mostafaei, Shayan, Oveisi, Mehrdad, Shiri, Isaac, Zaidi, Habib
Published in 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (16.10.2021)
Published in 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (16.10.2021)
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Conference Proceeding
RIDGE: Reproducibility, Integrity, Dependability, Generalizability, and Efficiency Assessment of Medical Image Segmentation Models
Maleki, Farhad, Moy, Linda, Forghani, Reza, Ghosh, Tapotosh, Ovens, Katie, Langer, Steve, Rouzrokh, Pouria, Khosravi, Bardia, Ganjizadeh, Ali, Warren, Daniel, Daneshjou, Roxana, Moassefi, Mana, Avval, Atlas Haddadi, Sotardi, Susan, Tenenholtz, Neil, Kitamura, Felipe, Kline, Timothy
Year of Publication 16.01.2024
Year of Publication 16.01.2024
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Journal Article
Medical Image Segmentation Review: The success of U-Net
Azad, Reza, Aghdam, Ehsan Khodapanah, Rauland, Amelie, Jia, Yiwei, Avval, Atlas Haddadi, Bozorgpour, Afshin, Karimijafarbigloo, Sanaz, Cohen, Joseph Paul, Adeli, Ehsan, Merhof, Dorit
Year of Publication 27.11.2022
Year of Publication 27.11.2022
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Journal Article
ComBat Harmonization of Image Reconstruction Parameters to Improve the Repeatability of Radiomics Features
Hajianfar, Ghasem, Avval, Atlas Haddadi, Sabouri, Maziar, Khateri, Maziar, Jenabi, Elnaz, Geramifar, Parham, Oveisi, Mehrdad, Shiri, Isaac, Zaidi, Habib
Published in 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (16.10.2021)
Published in 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (16.10.2021)
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Conference Proceeding
Prediction of Myocardial Function after Coronary Artery Bypass Graft using Cardiac Magnetic Resonance Imaging Radiomics
Arian, Fatemeh, Avval, Atlas Haddadi, Mostafaei, Shayan, Shahbazi, Zahra, Rajabi, Ahmad Bitarafan, Kalantari, Kiara Rezaei, Kasani, Kianosh, Bagherpour, Zahra, Oveisi, Mehrdad, Shiri, Isaac, Zaidi, Habib
Published in 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (16.10.2021)
Published in 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (16.10.2021)
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Conference Proceeding
Machine Learning Based Malignancy Prediction in Thyroid Nodules Malignancy: Radiomics Analysis of Ultrasound Images
Shayesteh, Sajad P., Nazari, Mostafa, Salahshour, Ali, Avval, Atlas Haddadi, Hajianfar, Ghasem, Araabi, Mohsen, Khateri, Maziar, Abdollahi, Hamid, Arabi, Hossein, Shiri, Isaac, Zaidi, Habib
Published in 2020 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (31.10.2020)
Published in 2020 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) (31.10.2020)
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Conference Proceeding
Thyroidiomics: An Automated Pipeline for Segmentation and Classification of Thyroid Pathologies from Scintigraphy Images
Sabouri, Maziar, Ahamed, Shadab, Asadzadeh, Azin, Atlas Haddadi Avval, Bagheri, Soroush, Arabi, Mohsen, Zakavi, Seyed Rasoul, Askari, Emran, Rasouli, Ali, Aghaee, Atena, Sehati, Mohaddese, Yousefirizi, Fereshteh, Uribe, Carlos, Hajianfar, Ghasem, Zaidi, Habib, Rahmim, Arman
Published in arXiv.org (22.07.2024)
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Published in arXiv.org (22.07.2024)
Paper
RIDGE: Reproducibility, Integrity, Dependability, Generalizability, and Efficiency Assessment of Medical Image Segmentation Models
Maleki, Farhad, Moy, Linda, ghani, Reza, Ghosh, Tapotosh, Ovens, Katie, Langer, Steve, Rouzrokh, Pouria, Khosravi, Bardia, Ganjizadeh, Ali, Warren, Daniel, Daneshjou, Roxana, Moassefi, Mana, Atlas Haddadi Avval, Sotardi, Susan, Tenenholtz, Neil, Kitamura, Felipe, Kline, Timothy
Published in arXiv.org (03.07.2024)
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Published in arXiv.org (03.07.2024)
Paper