Bioinformatic data processing pipelines in support of next‐generation sequencing‐based HIV drug resistance testing: the Winnipeg Consensus
Ji, Hezhao, Enns, Eric, Brumme, Chanson J., Parkin, Neil, Howison, Mark, Lee, Emma R., Capina, Rupert, Marinier, Eric, Avila‐Rios, Santiago, Sandstrom, Paul, Van Domselaar, Gary, Harrigan, Richard, Paredes, Roger, Kantor, Rami, Noguera‐Julian, Marc
Published in Journal of the International AIDS Society (01.10.2018)
Published in Journal of the International AIDS Society (01.10.2018)
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Journal Article
Are We Ready for NGS HIV Drug Resistance Testing? The Second "Winnipeg Consensus" Symposium
Ji, Hezhao, Sandstrom, Paul, Paredes, Roger, Harrigan, P Richard, Brumme, Chanson J, Avila Rios, Santiago, Noguera-Julian, Marc, Parkin, Neil, Kantor, Rami
Published in Viruses (27.05.2020)
Published in Viruses (27.05.2020)
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Phase angle as predictor of malnutrition in people living with HIV/AIDS
Osuna-Padilla, Iván Armando, Salazar Arenas, María de Los Angeles, Rodríguez-Moguel, Nadia Carolina, Aguilar-Vargas, Adriana, Montano Rivas, Julia Aurora, Ávila-Ríos, Santiago
Published in Nutrition in clinical practice (01.02.2022)
Published in Nutrition in clinical practice (01.02.2022)
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Evolutionary history and spatiotemporal dynamics of the HIV-1 subtype B epidemic in Guatemala
Mendoza, Yaxelis, García-Morales, Claudia, Bello, Gonzalo, Garrido-Rodríguez, Daniela, Tapia-Trejo, Daniela, Pascale, Juan Miguel, Girón-Callejas, Amalia Carolina, Mendizábal-Burastero, Ricardo, Escobar-Urias, Ingrid Yessenia, García-González, Blanca Leticia, Navas-Castillo, Jessenia Sabrina, Quintana-Galindo, María Cristina, Pinzón-Meza, Rodolfo, Mejía-Villatoro, Carlos Rodolfo, Avila-Ríos, Santiago, Reyes-Terán, Gustavo
Published in PloS one (13.09.2018)
Published in PloS one (13.09.2018)
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Longitudinal variation in human immunodeficiency virus long terminal repeat methylation in individuals on suppressive antiretroviral therapy
Cortés-Rubio, César N, Salgado-Montes de Oca, Gonzalo, Prado-Galbarro, Francisco J, Matías-Florentino, Margarita, Murakami-Ogasawara, Akio, Kuri-Cervantes, Leticia, Carranco-Arenas, Ana P, Ormsby, Christopher E, Cortés-Rubio, Ivette K, Reyes-Terán, Gustavo, Ávila-Ríos, Santiago
Published in Clinical epigenetics (13.09.2019)
Published in Clinical epigenetics (13.09.2019)
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HIV Drug Resistance Surveillance in Honduras after a Decade of Widespread Antiretroviral Therapy
Avila-Ríos, Santiago, García-Morales, Claudia, Tapia-Trejo, Daniela, Meza, Rita I, Nuñez, Sandra M, Parham, Leda, Flores, Norma A, Valladares, Diana, Pineda, Luisa M, Flores, Dixiana, Motiño, Roxana, Umanzor, Víctor, Carbajal, Candy, Murillo, Wendy, Lorenzana, Ivette, Palou, Elsa Y, Reyes-Terán, Gustavo
Published in PloS one (11.11.2015)
Published in PloS one (11.11.2015)
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HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression analysis
Gupta, Ravindra K, Gregson, John, Parkin, Neil, Haile-Selassie, Hiwot, Tanuri, Amilcar, Andrade Forero, Liliana, Kaleebu, Pontiano, Watera, Christine, Aghokeng, Avelin, Mutenda, Nicholus, Dzangare, Janet, Hone, San, Hang, Zaw Zaw, Garcia, Judith, Garcia, Zully, Marchorro, Paola, Beteta, Enrique, Giron, Amalia, Hamers, Raph, Inzaule, Seth, Frenkel, Lisa M, Chung, Michael H, de Oliveira, Tulio, Pillay, Deenan, Naidoo, Kogie, Kharsany, Ayesha, Kugathasan, Ruthiran, Cutino, Teresa, Hunt, Gillian, Avila Rios, Santiago, Doherty, Meg, Jordan, Michael R, Bertagnolio, Silvia
Published in The Lancet infectious diseases (01.03.2018)
Published in The Lancet infectious diseases (01.03.2018)
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Recurrent Potent Human Neutralizing Antibodies to Zika Virus in Brazil and Mexico
Robbiani, Davide F., Bozzacco, Leonia, Keeffe, Jennifer R., Khouri, Ricardo, Olsen, Priscilla C., Gazumyan, Anna, Schaefer-Babajew, Dennis, Avila-Rios, Santiago, Nogueira, Lilian, Patel, Roshni, Azzopardi, Stephanie A., Uhl, Lion F.K., Saeed, Mohsan, Sevilla-Reyes, Edgar E., Agudelo, Marianna, Yao, Kai-Hui, Golijanin, Jovana, Gristick, Harry B., Lee, Yu E., Hurley, Arlene, Caskey, Marina, Pai, Joy, Oliveira, Thiago, Wunder, Elsio A., Sacramento, Gielson, Nery, Nivison, Orge, Cibele, Costa, Federico, Reis, Mitermayer G., Thomas, Neena M., Eisenreich, Thomas, Weinberger, Daniel M., de Almeida, Antonio R.P., West, Anthony P., Rice, Charles M., Bjorkman, Pamela J., Reyes-Teran, Gustavo, Ko, Albert I., MacDonald, Margaret R., Nussenzweig, Michel C.
Published in Cell (04.05.2017)
Published in Cell (04.05.2017)
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Profound phenotypic and epigenetic heterogeneity of the HIV-1-infected CD4+ T cell reservoir
Wu, Vincent H., Nordin, Jayme M. L., Nguyen, Son, Joy, Jaimy, Mampe, Felicity, del Rio Estrada, Perla M., Torres-Ruiz, Fernanda, González-Navarro, Mauricio, Luna-Villalobos, Yara Andrea, Ávila-Ríos, Santiago, Reyes-Terán, Gustavo, Tebas, Pablo, Montaner, Luis J., Bar, Katharine J., Vella, Laura A., Betts, Michael R.
Published in Nature immunology (01.02.2023)
Published in Nature immunology (01.02.2023)
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Dysbiosis and structural disruption of the respiratory microbiota in COVID-19 patients with severe and fatal outcomes
Hernández-Terán, Alejandra, Mejía-Nepomuceno, Fidencio, Herrera, María Teresa, Barreto, Omar, García, Emma, Castillejos, Manuel, Boukadida, Celia, Matias-Florentino, Margarita, Rincón-Rubio, Alma, Avila-Rios, Santiago, Mújica-Sánchez, Mario, Serna-Muñoz, Ricardo, Becerril-Vargas, Eduardo, Guadarrama-Pérez, Cristobal, Ahumada-Topete, Víctor Hugo, Rodríguez-Llamazares, Sebastián, Martínez-Orozco, José Arturo, Salas-Hernández, Jorge, Pérez-Padilla, Rogelio, Vázquez-Pérez, Joel Armando
Published in Scientific reports (29.10.2021)
Published in Scientific reports (29.10.2021)
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Dynamics and Dispersal of Local Human Immunodeficiency Virus Epidemics Within San Diego and Across the San Diego–Tijuana Border
Vrancken, Bram, Mehta, Sanjay R, Ávila-Ríos, Santiago, García-Morales, Claudia, Tapia-Trejo, Daniela, Reyes-Terán, Gustavo, Navarro-Álvarez, Samuel, Little, Susan J, Hoenigl, Martin, Pines, Heather A, Patterson, Thomas, Strathdee, Steffanie A, Smith, Davey M, Dellicour, Simon, Chaillon, Antoine
Published in Clinical infectious diseases (05.10.2021)
Published in Clinical infectious diseases (05.10.2021)
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Analysis of unusual and signature APOBEC-mutations in HIV-1 pol next-generation sequences
Tzou, Philip L, Kosakovsky Pond, Sergei L, Avila-Rios, Santiago, Holmes, Susan P, Kantor, Rami, Shafer, Robert W
Published in PloS one (26.02.2020)
Published in PloS one (26.02.2020)
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Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico
Taboada, Blanca, Vazquez-Perez, Joel Armando, Muñoz-Medina, José Esteban, Ramos-Cervantes, Pilar, Escalera-Zamudio, Marina, Boukadida, Celia, Sanchez-Flores, Alejandro, Isa, Pavel, Mendieta-Condado, Edgar, Martínez-Orozco, José A, Becerril-Vargas, Eduardo, Salas-Hernández, Jorge, Grande, Ricardo, González-Torres, Carolina, Gaytán-Cervantes, Francisco Javier, Vazquez, Gloria, Pulido, Francisco, Araiza-Rodríguez, Adnan, Garcés-Ayala, Fabiola, González-Bonilla, Cesar Raúl, Grajales-Muñiz, Concepción, Borja-Aburto, Víctor Hugo, Barrera-Badillo, Gisela, López, Susana, Hernández-Rivas, Lucía, Perez-Padilla, Rogelio, López-Martínez, Irma, Ávila-Ríos, Santiago, Ruiz-Palacios, Guillermo, Ramírez-González, José Ernesto, Arias, Carlos F
Published in Journal of virology (31.08.2020)
Published in Journal of virology (31.08.2020)
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Assessing HIV knowledge in Mexican people living with HIV: development and validation of CC-VIH questionnaire
Gutiérrez-Velilla, Ester, Pérez-Sánchez, Ivonne Nalliely, Alvarado-de la Barrera, Claudia, Ávila-Ríos, Santiago, Caballero-Suárez, Nancy Patricia
Published in Health promotion international (01.12.2023)
Published in Health promotion international (01.12.2023)
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Optic neuritis following SARS-CoV-2 infection
Rodríguez-Rodríguez, Mónica Saray, Romero-Castro, Rosa María, Alvarado-de la Barrera, Claudia, González-Cannata, María Gabriela, García-Morales, Ana Karen, Ávila-Ríos, Santiago
Published in Journal of neurovirology (01.04.2021)
Published in Journal of neurovirology (01.04.2021)
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Normal weight obesity is associated with hypercholesterolemia and low muscle mass in persons living with HIV on antiretroviral treatment
Osuna-Padilla, Ivan A., Rodríguez-Moguel, Nadia C., Aguilar-Vargas, Adriana, Rodríguez-Aguirre, Edna, Briceño, Olivia, Ávila-Ríos, Santiago
Published in Nutrition (Burbank, Los Angeles County, Calif.) (01.02.2022)
Published in Nutrition (Burbank, Los Angeles County, Calif.) (01.02.2022)
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Unique features of HLA-mediated HIV evolution in a Mexican cohort: a comparative study
Avila-Rios, Santiago, Ormsby, Christopher E, Carlson, Jonathan M, Valenzuela-Ponce, Humberto, Blanco-Heredia, Juan, Garrido-Rodriguez, Daniela, Garcia-Morales, Claudia, Heckerman, David, Brumme, Zabrina L, Mallal, Simon, John, Mina, Espinosa, Enrique, Reyes-Teran, Gustavo
Published in Retrovirology (10.08.2009)
Published in Retrovirology (10.08.2009)
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