Adaptive introgression as a driver of local adaptation to climate in European white oaks
Leroy, Thibault, Louvet, Jean-Marc, Lalanne, Céline, Le Provost, Grégoire, Labadie, Karine, Aury, Jean-Marc, Delzon, Sylvain, Plomion, Christophe, Kremer, Antoine
Published in The New phytologist (01.05.2020)
Published in The New phytologist (01.05.2020)
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Extensive recent secondary contacts between four European white oak species
Leroy, Thibault, Roux, Camille, Villate, Laure, Bodénès, Catherine, Romiguier, Jonathan, Paiva, Jorge A P, Dossat, Carole, Aury, Jean-Marc, Plomion, Christophe, Kremer, Antoine
Published in The New phytologist (01.04.2017)
Published in The New phytologist (01.04.2017)
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De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
Schmidt, Maximilian H.-W., Vogel, Alexander, Denton, Alisandra K., Istace, Benjamin, Wormit, Alexandra, van de Geest, Henri, Bolger, Marie E., Alseekh, Saleh, Maß, Janina, Pfaff, Christian, Schurr, Ulrich, Chetelat, Roger, Maumus, Florian, Aury, Jean-Marc, Koren, Sergey, Fernie, Alisdair R., Zamir, Dani, Bolger, Anthony M., Usadel, Björn
Published in The Plant cell (01.10.2017)
Published in The Plant cell (01.10.2017)
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Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers
Leroy, Thibault, Rougemont, Quentin, Dupouey, Jean-Luc, Bodénès, Catherine, Lalanne, Céline, Belser, Caroline, Labadie, Karine, Le Provost, Grégoire, Aury, Jean-Marc, Kremer, Antoine, Plomion, Christophe
Published in The New phytologist (01.05.2020)
Published in The New phytologist (01.05.2020)
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Transposition favors the generation of large effect mutations that may facilitate rapid adaption
Quadrana, Leandro, Etcheverry, Mathilde, Gilly, Arthur, Caillieux, Erwann, Madoui, Mohammed-Amin, Guy, Julie, Bortolini Silveira, Amanda, Engelen, Stefan, Baillet, Victoire, Wincker, Patrick, Aury, Jean-Marc, Colot, Vincent
Published in Nature communications (31.07.2019)
Published in Nature communications (31.07.2019)
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Mapping the Epigenetic Basis of Complex Traits
Cortijo, Sandra, Wardenaar, René, Colomé-Tatché, Maria, Gilly, Arthur, Etcheverry, Mathilde, Labadie, Karine, Caillieux, Erwann, Hospital, Fréderic, Aury, Jean-Marc, Wincker, Patrick, Roudier, François, Jansen, Ritsert C., Colot, Vincent, Johannes, Frank
Published in Science (American Association for the Advancement of Science) (07.03.2014)
Published in Science (American Association for the Advancement of Science) (07.03.2014)
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Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
Sessegolo, Camille, Cruaud, Corinne, Da Silva, Corinne, Cologne, Audric, Dubarry, Marion, Derrien, Thomas, Lacroix, Vincent, Aury, Jean-Marc
Published in Scientific reports (17.10.2019)
Published in Scientific reports (17.10.2019)
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Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea
Martin, Guillaume, Cottin, Aurélien, Baurens, Franc‐Christophe, Labadie, Karine, Hervouet, Catherine, Salmon, Frédéric, Paulo‐de‐la‐Reberdiere, Nilda, Van den Houwe, Ines, Sardos, Julie, Aury, Jean‐Marc, D'Hont, Angélique, Yahiaoui, Nabila
Published in The Plant journal : for cell and molecular biology (01.02.2023)
Published in The Plant journal : for cell and molecular biology (01.02.2023)
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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
Denoeud, France, Carretero-Paulet, Lorenzo, Dereeper, Alexis, Droc, Gaëtan, Guyot, Romain, Pietrella, Marco, Zheng, Chunfang, Alberti, Adriana, Anthony, François, Aprea, Giuseppe, Aury, Jean-Marc, Bento, Pascal, Bernard, Maria, Bocs, Stéphanie, Campa, Claudine, Cenci, Alberto, Combes, Marie-Christine, Crouzillat, Dominique, Da Silva, Corinne, Daddiego, Loretta, De Bellis, Fabien, Dussert, Stéphane, Garsmeur, Olivier, Gayraud, Thomas, Guignon, Valentin, Jahn, Katharina, Jamilloux, Véronique, Joët, Thierry, Labadie, Karine, Lan, Tianying, Leclercq, Julie, Lepelley, Maud, Leroy, Thierry, Li, Lei-Ting, Librado, Pablo, Lopez, Loredana, Muñoz, Adriana, Noel, Benjamin, Pallavicini, Alberto, Perrotta, Gaetano, Poncet, Valérie, Pot, David, Priyono, Rigoreau, Michel, Rouard, Mathieu, Rozas, Julio, Tranchant-Dubreuil, Christine, VanBuren, Robert, Zhang, Qiong, Andrade, Alan C., Argout, Xavier, Bertrand, Benoît, de Kochko, Alexandre, Graziosi, Giorgio, Henry, Robert J, Jayarama, Ming, Ray, Nagai, Chifumi, Rounsley, Steve, Sankoff, David, Giuliano, Giovanni, Albert, Victor A., Wincker, Patrick, Lashermes, Philippe
Published in Science (American Association for the Advancement of Science) (05.09.2014)
Published in Science (American Association for the Advancement of Science) (05.09.2014)
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Structural and functional partitioning of bread wheat chromosome 3B
Choulet, Frédéric, Alberti, Adriana, Theil, Sébastien, Glover, Natasha, Barbe, Valérie, Daron, Josquin, Pingault, Lise, Sourdille, Pierre, Couloux, Arnaud, Paux, Etienne, Leroy, Philippe, Mangenot, Sophie, Guilhot, Nicolas, Le Gouis, Jacques, Balfourier, Francois, Alaux, Michael, Jamilloux, Véronique, Poulain, Julie, Durand, Céline, Bellec, Arnaud, Gaspin, Christine, Safar, Jan, Dolezel, Jaroslav, Rogers, Jane, Vandepoele, Klaas, Aury, Jean-Marc, Mayer, Klaus, Berges, Hélène, Quesneville, Hadi, Wincker, Patrick, Feuillet, Catherine
Published in Science (American Association for the Advancement of Science) (18.07.2014)
Published in Science (American Association for the Advancement of Science) (18.07.2014)
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Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood
Wagner, Stefanie, Seguin‐Orlando, Andaine, Leplé, Jean‐Charles, Leroy, Thibault, Lalanne, Céline, Labadie, Karine, Aury, Jean‐Marc, Poirier, Sandy, Wincker, Patrick, Plomion, Christophe, Kremer, Antoine, Orlando, Ludovic
Published in Molecular ecology (01.02.2024)
Published in Molecular ecology (01.02.2024)
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Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait‐based approach
Monjot, Arthur, Bronner, Gisèle, Courtine, Damien, Cruaud, Corinne, Da Silva, Corinne, Aury, Jean‐Marc, Gavory, Frederick, Moné, Anne, Vellet, Agnès, Wawrzyniak, Ivan, Colombet, Jonathan, Billard, Hermine, Debroas, Didier, Lepère, Cécile
Published in Environmental microbiology (01.12.2023)
Published in Environmental microbiology (01.12.2023)
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Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
Belser, Caroline, Baurens, Franc-Christophe, Noel, Benjamin, Martin, Guillaume, Cruaud, Corinne, Istace, Benjamin, Yahiaoui, Nabila, Labadie, Karine, Hřibová, Eva, Doležel, Jaroslav, Lemainque, Arnaud, Wincker, Patrick, D’Hont, Angélique, Aury, Jean-Marc
Published in Communications biology (07.09.2021)
Published in Communications biology (07.09.2021)
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Epigenomic and structural events preclude recombination in Brassica napus
Boideau, Franz, Richard, Gautier, Coriton, Olivier, Huteau, Virginie, Belser, Caroline, Deniot, Gwenaelle, Eber, Frédérique, Falentin, Cyril, Ferreira de Carvalho, Julie, Gilet, Marie, Lodé‐Taburel, Maryse, Maillet, Loeiz, Morice, Jérôme, Trotoux, Gwenn, Aury, Jean‐Marc, Chèvre, Anne‐Marie, Rousseau‐Gueutin, Mathieu
Published in The New phytologist (01.04.2022)
Published in The New phytologist (01.04.2022)
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Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods
Martin, Guillaume, Baurens, Franc-Christophe, Droc, Gaëtan, Rouard, Mathieu, Cenci, Alberto, Kilian, Andrzej, Hastie, Alex, Doležel, Jaroslav, Aury, Jean-Marc, Alberti, Adriana, Carreel, Françoise, D'Hont, Angélique
Published in BMC genomics (16.03.2016)
Published in BMC genomics (16.03.2016)
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Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
Blanc-Mathieu, Romain, Perfus-Barbeoch, Laetitia, Aury, Jean-Marc, Da Rocha, Martine, Gouzy, Jérôme, Sallet, Erika, Martin-Jimenez, Cristina, Bailly-Bechet, Marc, Castagnone-Sereno, Philippe, Flot, Jean-François, Kozlowski, Djampa K, Cazareth, Julie, Couloux, Arnaud, Da Silva, Corinne, Guy, Julie, Kim-Jo, Yu-Jin, Rancurel, Corinne, Schiex, Thomas, Abad, Pierre, Wincker, Patrick, Danchin, Etienne G J
Published in PLoS genetics (08.06.2017)
Published in PLoS genetics (08.06.2017)
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Journal Article
Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
Belser, Caroline, Istace, Benjamin, Denis, Erwan, Dubarry, Marion, Baurens, Franc-Christophe, Falentin, Cyril, Genete, Mathieu, Berrabah, Wahiba, Chèvre, Anne-Marie, Delourme, Régine, Deniot, Gwenaëlle, Denoeud, France, Duffé, Philippe, Engelen, Stefan, Lemainque, Arnaud, Manzanares-Dauleux, Maria, Martin, Guillaume, Morice, Jérôme, Noel, Benjamin, Vekemans, Xavier, D’Hont, Angélique, Rousseau-Gueutin, Mathieu, Barbe, Valérie, Cruaud, Corinne, Wincker, Patrick, Aury, Jean-Marc
Published in Nature plants (01.11.2018)
Published in Nature plants (01.11.2018)
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Journal Article
Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets
Gargiulo, Roberta, Decroocq, Véronique, González‐Martínez, Santiago C., Paz‐Vinas, Ivan, Aury, Jean‐Marc, Lesur Kupin, Isabelle, Plomion, Christophe, Schmitt, Sylvain, Scotti, Ivan, Heuertz, Myriam
Published in Evolutionary applications (01.05.2024)
Published in Evolutionary applications (01.05.2024)
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