A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI
Iglesias, Juan Eugenio, Augustinack, Jean C., Nguyen, Khoa, Player, Christopher M., Player, Allison, Wright, Michelle, Roy, Nicole, Frosch, Matthew P., McKee, Ann C., Wald, Lawrence L., Fischl, Bruce, Van Leemput, Koen
Published in NeuroImage (Orlando, Fla.) (15.07.2015)
Published in NeuroImage (Orlando, Fla.) (15.07.2015)
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Journal Article
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images
Greve, Douglas N., Billot, Benjamin, Cordero, Devani, Hoopes, Andrew, Hoffmann, Malte, Dalca, Adrian V., Fischl, Bruce, Iglesias, Juan Eugenio, Augustinack, Jean C.
Published in NeuroImage (Orlando, Fla.) (01.12.2021)
Published in NeuroImage (Orlando, Fla.) (01.12.2021)
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Journal Article
7 Tesla MRI of the ex vivo human brain at 100 micron resolution
Edlow, Brian L., Mareyam, Azma, Horn, Andreas, Polimeni, Jonathan R., Witzel, Thomas, Tisdall, M. Dylan, Augustinack, Jean C., Stockmann, Jason P., Diamond, Bram R., Stevens, Allison, Tirrell, Lee S., Folkerth, Rebecca D., Wald, Lawrence L., Fischl, Bruce, van der Kouwe, Andre
Published in Scientific data (30.10.2019)
Published in Scientific data (30.10.2019)
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Journal Article
Stereology neuron counts correlate with deep learning estimates in the human hippocampal subregions
Oltmer, Jan, Rosenblum, Emma W., Williams, Emily M., Roy, Jessica, Llamas-Rodriguez, Josué, Perosa, Valentina, Champion, Samantha N., Frosch, Matthew P., Augustinack, Jean C.
Published in Scientific reports (11.04.2023)
Published in Scientific reports (11.04.2023)
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Journal Article
A harmonized segmentation protocol for hippocampal and parahippocampal subregions: Why do we need one and what are the key goals?
Wisse, Laura E.M., Daugherty, Ana M., Olsen, Rosanna K., Berron, David, Carr, Valerie A., Stark, Craig E.L., Amaral, Robert S.C., Amunts, Katrin, Augustinack, Jean C., Bender, Andrew R., Bernstein, Jeffrey D., Boccardi, Marina, Bocchetta, Martina, Burggren, Alison, Chakravarty, M. Mallar, Chupin, Marie, Ekstrom, Arne, de Flores, Robin, Insausti, Ricardo, Kanel, Prabesh, Kedo, Olga, Kennedy, Kristen M., Kerchner, Geoffrey A., LaRocque, Karen F., Liu, Xiuwen, Maass, Anne, Malykhin, Nicolai, Mueller, Susanne G., Ofen, Noa, Palombo, Daniela J., Parekh, Mansi B., Pluta, John B., Pruessner, Jens C., Raz, Naftali, Rodrigue, Karen M., Schoemaker, Dorothee, Shafer, Andrea T., Steve, Trevor A., Suthana, Nanthia, Wang, Lei, Winterburn, Julie L., Yassa, Michael A., Yushkevich, Paul A., la Joie, Renaud
Published in Hippocampus (01.01.2017)
Published in Hippocampus (01.01.2017)
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Journal Article
Quantitative optical coherence microscopy of neuron morphology in human entorhinal cortex
Wang, Hui, Gong, Dayang, Augustinack, Jean C, Magnain, Caroline
Published in Frontiers in neuroscience (21.04.2023)
Published in Frontiers in neuroscience (21.04.2023)
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Journal Article
Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex
McNab, Jennifer A., Polimeni, Jonathan R., Wang, Ruopeng, Augustinack, Jean C., Fujimoto, Kyoko, Stevens, Allison, Janssens, Thomas, Farivar, Reza, Folkerth, Rebecca D., Vanduffel, Wim, Wald, Lawrence L.
Published in NeuroImage (Orlando, Fla.) (01.04.2013)
Published in NeuroImage (Orlando, Fla.) (01.04.2013)
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Journal Article
Differential effects of aging and Alzheimer's disease on medial temporal lobe cortical thickness and surface area
Dickerson, Bradford C, Feczko, Eric, Augustinack, Jean C, Pacheco, Jenni, Morris, John C, Fischl, Bruce, Buckner, Randy L
Published in Neurobiology of aging (01.03.2009)
Published in Neurobiology of aging (01.03.2009)
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Journal Article
Scalable mapping of myelin and neuron density in the human brain with micrometer resolution
Chang, Shuaibin, Varadarajan, Divya, Yang, Jiarui, Chen, Ichun Anderson, Kura, Sreekanth, Magnain, Caroline, Augustinack, Jean C., Fischl, Bruce, Greve, Douglas N., Boas, David A., Wang, Hui
Published in Scientific reports (10.01.2022)
Published in Scientific reports (10.01.2022)
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Journal Article
Probabilistic Template of the Lateral Parabrachial Nucleus, Medial Parabrachial Nucleus, Vestibular Nuclei Complex, and Medullary Viscero-Sensory-Motor Nuclei Complex in Living Humans From 7 Tesla MRI
Singh, Kavita, Indovina, Iole, Augustinack, Jean C, Nestor, Kimberly, García-Gomar, María G, Staab, Jeffrey P, Bianciardi, Marta
Published in Frontiers in neuroscience (23.01.2020)
Published in Frontiers in neuroscience (23.01.2020)
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Journal Article
Pentad: A reproducible cytoarchitectonic protocol and its application to parcellation of the human hippocampus
Williams, Emily M, Rosenblum, Emma W, Pihlstrom, Nicole, Llamas-Rodríguez, Josué, Champion, Samantha, Frosch, Matthew P, Augustinack, Jean C
Published in Frontiers in neuroanatomy (09.02.2023)
Published in Frontiers in neuroanatomy (09.02.2023)
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Journal Article
Accurate prediction of V1 location from cortical folds in a surface coordinate system
Hinds, Oliver P., Rajendran, Niranjini, Polimeni, Jonathan R., Augustinack, Jean C., Wiggins, Graham, Wald, Lawrence L., Diana Rosas, H., Potthast, Andreas, Schwartz, Eric L., Fischl, Bruce
Published in NeuroImage (Orlando, Fla.) (15.02.2008)
Published in NeuroImage (Orlando, Fla.) (15.02.2008)
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Journal Article
H.M.'s contributions to neuroscience: A review and autopsy studies
Augustinack, Jean C., van der Kouwe, André J.W., Salat, David H., Benner, Thomas, Stevens, Allison A., Annese, Jacopo, Fischl, Bruce, Frosch, Matthew P., Corkin, Suzanne
Published in Hippocampus (01.11.2014)
Published in Hippocampus (01.11.2014)
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Journal Article
Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI
Augustinack, Jean C., Huber, Kristen E., Stevens, Allison A., Roy, Michelle, Frosch, Matthew P., van der Kouwe, André J.W., Wald, Lawrence L., Van Leemput, Koen, McKee, Ann C., Fischl, Bruce
Published in NeuroImage (Orlando, Fla.) (01.01.2013)
Published in NeuroImage (Orlando, Fla.) (01.01.2013)
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Journal Article
Regional staging of white matter signal abnormalities in aging and Alzheimer's disease
Lindemer, Emily R, Greve, Douglas N, Fischl, Bruce R, Augustinack, Jean C, Salat, David H
Published in NeuroImage clinical (01.01.2017)
Published in NeuroImage clinical (01.01.2017)
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Journal Article
Multi‐Scale Label‐Free Human Brain Imaging with Integrated Serial Sectioning Polarization Sensitive Optical Coherence Tomography and Two‐Photon Microscopy
Chang, Shuaibin, Yang, Jiarui, Novoseltseva, Anna, Abdelhakeem, Ayman, Hyman, Mackenzie, Fu, Xinlei, Li, Chenglin, Chen, Shih‐Chi, Augustinack, Jean C., Magnain, Caroline, Fischl, Bruce, Mckee, Ann C., Boas, David A., Chen, Ichun Anderson, Wang, Hui
Published in Advanced science (01.12.2023)
Published in Advanced science (01.12.2023)
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Journal Article
Caspase Activation and Neuroprotection in Caspase-3-Deficient Mice after in vivo Cerebral Ischemia and in vitro Oxygen Glucose Deprivation
Le, Dean A., Wu, Yongqin, Huang, Zhihong, Matsushita, Kohji, Plesnila, Nikolaus, Augustinack, Jean C., Hyman, Bradley T., Yuan, Junying, Kuida, Keisuke, Flavell, Richard A., Moskowitz, Michael A.
Published in Proceedings of the National Academy of Sciences - PNAS (12.11.2002)
Published in Proceedings of the National Academy of Sciences - PNAS (12.11.2002)
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