Multiscale Coupling of an Agent-Based Model of Tissue Fibrosis and a Logic-Based Model of Intracellular Signaling
Rikard, S Michaela, Athey, Thomas L, Nelson, Anders R, Christiansen, Steven L M, Lee, Jia-Jye, Holmes, Jeffrey W, Peirce, Shayn M, Saucerman, Jeffrey J
Published in Frontiers in physiology (17.12.2019)
Published in Frontiers in physiology (17.12.2019)
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Journal Article
Hidden Markov modeling for maximum probability neuron reconstruction
Athey, Thomas L., Tward, Daniel J., Mueller, Ulrich, Vogelstein, Joshua T., Miller, Michael I.
Published in Communications biology (25.04.2022)
Published in Communications biology (25.04.2022)
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Journal Article
A 7 Tesla Amygdalar-Hippocampal Shape Analysis of Lithium Response in Bipolar Disorder
Athey, Thomas L, Ceritoglu, Can, Tward, Daniel J, Kutten, Kwame S, DePaulo, J Raymond, Glazer, Kara, Goes, Fernando S, Kelsoe, John R, Mondimore, Francis, Nievergelt, Caroline M, Rootes-Murdy, Kelly, Zandi, Peter P, Ratnanather, J Tilak, Mahon, Pamela B
Published in Frontiers in psychiatry (16.02.2021)
Published in Frontiers in psychiatry (16.02.2021)
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Journal Article
Preserving Derivative Information while Transforming Neuronal Curves
Athey, Thomas L., Tward, Daniel J., Mueller, Ulrich, Younes, Laurent, Vogelstein, Joshua T., Miller, Michael I.
Published in Neuroinformatics (Totowa, N.J.) (01.01.2024)
Published in Neuroinformatics (Totowa, N.J.) (01.01.2024)
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Journal Article
BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes
Athey, Thomas L., Wright, Matthew A., Pavlovic, Marija, Chandrashekhar, Vikram, Deisseroth, Karl, Miller, Michael I., Vogelstein, Joshua T.
Published in Neuroinformatics (Totowa, N.J.) (01.10.2023)
Published in Neuroinformatics (Totowa, N.J.) (01.10.2023)
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Journal Article
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data
Poline, Jean-Baptiste, Kennedy, David N., Sommer, Friedrich T., Ascoli, Giorgio A., Van Essen, David C., Ferguson, Adam R., Grethe, Jeffrey S., Hawrylycz, Michael J., Thompson, Paul M., Poldrack, Russell A., Ghosh, Satrajit S., Keator, David B., Athey, Thomas L., Vogelstein, Joshua T., Mayberg, Helen S., Martone, Maryann E.
Published in Neuroinformatics (Totowa, N.J.) (01.04.2022)
Published in Neuroinformatics (Totowa, N.J.) (01.04.2022)
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Journal Article
Preserving Derivative Information while Transforming Neuronal Curves
Athey, Thomas L, Tward, Daniel J, Mueller, Ulrich, Younes, Laurent, Vogelstein, Joshua T, Miller, Michael I
Published in ArXiv.org (01.08.2023)
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Published in ArXiv.org (01.08.2023)
Journal Article
SmartEM: machine-learning guided electron microscopy
Meirovitch, Yaron, Park, Core Francisco, Mi, Lu, Potocek, Pavel, Sawmya, Shashata, Li, Yicong, Chandok, Ishaan Singh, Athey, Thomas L, Karlupia, Neha, Wu, Yuelong, Berger, Daniel R, Schalek, Richard, Pfister, Hanspeter, Schoenmakers, Remco, Peemen, Maurice, Lichtman, Jeff W, Samuel, Aravinthan D T, Shavit, Nir
Published in bioRxiv (15.06.2024)
Published in bioRxiv (15.06.2024)
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Journal Article
BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes
Athey, Thomas L, Wright, Matthew A, Pavlovic, Marija, Chandrashekhar, Vikram, Deisseroth, Karl, Miller, Michael I, Vogelstein, Joshua T
Published in bioRxiv (01.03.2023)
Published in bioRxiv (01.03.2023)
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Preserving Derivative Information while Transforming Neuronal Curves
Athey, Thomas L, Tward, Daniel J, Mueller, Ulrich, Younes, Laurent, Vogelstein, Joshua T, Miller, Michael I
Published in Research square (31.03.2023)
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Published in Research square (31.03.2023)
Journal Article
Preserving Derivative Information while Transforming Neuronal Curves
Athey, Thomas L, Tward, Daniel J, Mueller, Ulrich, Younes, Laurent, Vogelstein, Joshua T, Miller, Michael I
Year of Publication 16.03.2023
Year of Publication 16.03.2023
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Journal Article
Fitting Splines to Axonal Arbors Quantifies Relationship between Branch Order and Geometry
Athey, Thomas L, Teneggi, Jacopo, Vogelstein, Joshua T, Tward, Daniel, Mueller, Ulrich, Miller, Michael I
Published in arXiv.org (05.06.2021)
Published in arXiv.org (05.06.2021)
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Journal Article
Hidden Markov Modeling for Maximum Likelihood Neuron Reconstruction
Athey, Thomas L, Tward, Daniel J, Mueller, Ulrich, Vogelstein, Joshua T, Miller, Michael I
Year of Publication 04.06.2021
Year of Publication 04.06.2021
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Journal Article
AutoGMM: Automatic and Hierarchical Gaussian Mixture Modeling in Python
Athey, Thomas L, Liu, Tingshan, Pedigo, Benjamin D, Vogelstein, Joshua T
Year of Publication 05.09.2019
Year of Publication 05.09.2019
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Journal Article
AutoGMM: Automatic and Hierarchical Gaussian Mixture Modeling in Python
Athey, Thomas L, Liu, Tingshan, Pedigo, Benjamin D, Vogelstein, Joshua T
Published in arXiv.org (12.08.2021)
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Published in arXiv.org (12.08.2021)
Paper
The BRAIN Initiative Cell Census Data Ecosystem: A User's Guide
Biccn Data Ecosytem Collaboration, Hawrylycz, Michael J, Martone, Maryann E, Hof, Patrick R, Lein, Ed S, Regev, Aviv, Ascoli, Giorgio A A, Bjaalie, Jan G, Hong-Wei, Dong, Ghosh, Satrajit S, Gillis, Jesse, Hertzano, Ronna, Haynor, David R, Kim, Yongsoo, Liu, Yufeng, Miller, Jeremy A, Mitra, Partha P, Mukamel, Eran, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L, Sanchez, Raymond, Ropelewski, Alex, Scheuermann, Richard H, Tan, Shawn Z K, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L, Baker, Pamela M, Baker, Cody, Baker, Katherine S, Bandrowski, Anita, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Song-Lin, Ding, Dolbeare, Tim, Ecker, Joseph R, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P, Gee, James, Gillespie, Tom, Gouwens, Nathan, Halchenko, Yaroslav O, Harris, Nomi, Herb, Brian R, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Yang, Li, Liu, Hanqing, Markuhar, Anup, Mathews, James, Mathews, Kaylee L, Miller, Michael I, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J, Ng, Lydia, Orvis, Joshua, Puchades, Maja A, Qu, Lei, Receveur, Joseph P, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Thompson, Carol L, Tward, Daniel, Cindy T J Van Velthoven, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zeng, Hongkui, Guo-Qiang, Zhang, Zhang, Yun R, Zheng, Jim W, Zingg, Brian
Published in bioRxiv (30.10.2022)
Published in bioRxiv (30.10.2022)
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