A new and updated resource for codon usage tables
Athey, John, Alexaki, Aikaterini, Osipova, Ekaterina, Rostovtsev, Alexandre, Santana-Quintero, Luis V, Katneni, Upendra, Simonyan, Vahan, Kimchi-Sarfaty, Chava
Published in BMC bioinformatics (02.09.2017)
Published in BMC bioinformatics (02.09.2017)
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Journal Article
TissueCoCoPUTs: Novel Human Tissue-Specific Codon and Codon-Pair Usage Tables Based on Differential Tissue Gene Expression
Kames, Jacob, Alexaki, Aikaterini, Holcomb, David D., Santana-Quintero, Luis V., Athey, John C., Hamasaki-Katagiri, Nobuko, Katneni, Upendra, Golikov, Anton, Ibla, Juan C., Bar, Haim, Kimchi-Sarfaty, Chava
Published in Journal of molecular biology (15.05.2020)
Published in Journal of molecular biology (15.05.2020)
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Journal Article
Effects of codon optimization on coagulation factor IX translation and structure: Implications for protein and gene therapies
Alexaki, Aikaterini, Hettiarachchi, Gaya K., Athey, John C., Katneni, Upendra K., Simhadri, Vijaya, Hamasaki-Katagiri, Nobuko, Nanavaty, Puja, Lin, Brian, Takeda, Kazuyo, Freedberg, Darón, Monroe, Dougald, McGill, Joseph R., Peters, Robert, Kames, Jacob M., Holcomb, David D., Hunt, Ryan C., Sauna, Zuben E., Gelinas, Amy, Janjic, Nebojsa, DiCuccio, Michael, Bar, Haim, Komar, Anton A., Kimchi-Sarfaty, Chava
Published in Scientific reports (29.10.2019)
Published in Scientific reports (29.10.2019)
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Journal Article
Translational and transcriptional responses in human primary hepatocytes under hypoxia
Hettiarachchi, Gaya K, Katneni, Upendra K, Hunt, Ryan C, Kames, Jacob M, Athey, John C, Bar, Haim, Sauna, Zuben E, McGill, Joseph R, Ibla, Juan C, Kimchi-Sarfaty, Chava
Published in American journal of physiology: Gastrointestinal and liver physiology (01.06.2019)
Published in American journal of physiology: Gastrointestinal and liver physiology (01.06.2019)
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Journal Article
Structural, functional, and immunogenicity implications of F9 gene recoding
Katneni, Upendra K., Alexaki, Aikaterini, Hunt, Ryan C., Hamasaki-Katagiri, Nobuko, Hettiarachchi, Gaya K., Kames, Jacob M., McGill, Joseph R., Holcomb, David D., Athey, John C., Lin, Brian, Parunov, Leonid A., Kafri, Tal, Lu, Qi, Peters, Robert, Ovanesov, Mikhail V., Freedberg, Darón I., Bar, Haim, Komar, Anton A., Sauna, Zuben E., Kimchi-Sarfaty, Chava
Published in Blood advances (12.07.2022)
Published in Blood advances (12.07.2022)
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Journal Article
Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX [version 2; peer review: 3 approved]
Alexaki, Aikaterini, Kames, Jacob, Hettiarachchi, Gaya K, Athey, John C, Katneni, Upendra K, Hunt, Ryan C, Hamasaki-Katagiri, Nobuko, Holcomb, David D, DiCuccio, Michael, Bar, Haim, Komar, Anton A, Kimchi-Sarfaty, Chava
Published in F1000 research (2020)
Published in F1000 research (2020)
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Journal Article
Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX [version 1; peer review: 3 approved with reservations]
Alexaki, Aikaterini, Kames, Jacob, Hettiarachchi, Gaya K, Athey, John C, Katneni, Upendra K, Hunt, Ryan C, Hamasaki-Katagiri, Nobuko, Holcomb, David D, DiCuccio, Michael, Bar, Haim, Komar, Anton A, Kimchi-Sarfaty, Chava
Published in F1000 research (2020)
Published in F1000 research (2020)
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Journal Article
Complete Genome Sequence of Spiroplasma kunkelii Strain CR2-3x, Causal Agent of Corn Stunt Disease in Zea mays L
Davis, Robert E, Shao, Jonathan, Dally, Ellen L, Zhao, Yan, Gasparich, Gail E, Gaynor, Brady J, Athey, John C, Harrison, Nigel A, Donofrio, Nicole
Published in Genome announcements (Washington, DC) (22.10.2015)
Published in Genome announcements (Washington, DC) (22.10.2015)
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Journal Article
Codon and Codon-Pair Usage Tables (CoCoPUTs): Facilitating Genetic Variation Analyses and Recombinant Gene Design
Alexaki, Aikaterini, Kames, Jacob, Holcomb, David D., Athey, John, Santana-Quintero, Luis V., Lam, Phuc Vihn Nguyen, Hamasaki-Katagiri, Nobuko, Osipova, Ekaterina, Simonyan, Vahan, Bar, Haim, Komar, Anton A., Kimchi-Sarfaty, Chava
Published in Journal of molecular biology (14.06.2019)
Published in Journal of molecular biology (14.06.2019)
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Journal Article