Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases
Rifaioglu, Ahmet Sureyya, Atas, Heval, Martin, Maria Jesus, Cetin-Atalay, Rengul, Atalay, Volkan, Doğan, Tunca
Published in Briefings in bioinformatics (27.09.2019)
Published in Briefings in bioinformatics (27.09.2019)
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Journal Article
ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature
Dalkiran, Alperen, Rifaioglu, Ahmet Sureyya, Martin, Maria Jesus, Cetin-Atalay, Rengul, Atalay, Volkan, Doğan, Tunca
Published in BMC bioinformatics (21.09.2018)
Published in BMC bioinformatics (21.09.2018)
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Journal Article
Identification of novel reference genes based on MeSH categories
Ersahin, Tulin, Carkacioglu, Levent, Can, Tolga, Konu, Ozlen, Atalay, Volkan, Cetin-Atalay, Rengul
Published in PloS one (28.03.2014)
Published in PloS one (28.03.2014)
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Journal Article
ProFAB—open protein functional annotation benchmark
Özdilek, A Samet, Atakan, Ahmet, Özsarı, Gökhan, Acar, Aybar, Atalay, M Volkan, Doğan, Tunca, Rifaioğlu, Ahmet S
Published in Briefings in bioinformatics (19.03.2023)
Published in Briefings in bioinformatics (19.03.2023)
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Journal Article
DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations
Rifaioglu, Ahmet Sureyya, Nalbat, Esra, Atalay, Volkan, Martin, Maria Jesus, Cetin-Atalay, Rengul, Do an, Tunca
Published in Chemical science (Cambridge) (07.03.2020)
Published in Chemical science (Cambridge) (07.03.2020)
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Journal Article
Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools
Cetin-Atalay, Rengul, Kahraman, Deniz Cansen, Nalbat, Esra, Rifaioglu, Ahmet Sureyya, Atakan, Ahmet, Donmez, Ataberk, Atas, Heval, Atalay, M. Volkan, Acar, Aybar C., Doğan, Tunca
Published in Journal of gastrointestinal cancer (01.12.2021)
Published in Journal of gastrointestinal cancer (01.12.2021)
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Journal Article
iBioProVis: interactive visualization and analysis of compound bioactivity space
Donmez, Ataberk, Rifaioglu, Ahmet Sureyya, Acar, Aybar, Doğan, Tunca, Cetin-Atalay, Rengul, Atalay, Volkan
Published in Bioinformatics (15.08.2020)
Published in Bioinformatics (15.08.2020)
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Journal Article
iBioProVis: interactive visualization and analysis of compound bioactivity space
Donmez, Ataberk, Rifaioglu, Ahmet Sureyya, Acar, Aybar, Doğan, Tunca, Cetin-Atalay, Rengul, Atalay, Volkan
Published in Bioinformatics (01.11.2020)
Published in Bioinformatics (01.11.2020)
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Journal Article
Abstract 5235: In vitro validation of drug-target interactions revealed in silico by Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning (CROssBAR) in HCC
Nalbat, Esra, Rifaioglu, Ahmet Sureyya, Dogan, Tunca, Martin, Maria Jesus, Cetin-Atalay, Rengul, Atalay, Volkan
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations
Doğan, Tunca, Atas, Heval, Joshi, Vishal, Atakan, Ahmet, Rifaioglu, Ahmet Sureyya, Nalbat, Esra, Nightingale, Andrew, Saidi, Rabie, Volynkin, Vladimir, Zellner, Hermann, Cetin-Atalay, Rengul, Martin, Maria, Atalay, Volkan
Published in Nucleic acids research (20.09.2021)
Published in Nucleic acids research (20.09.2021)
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Journal Article
Transfer learning for drug–target interaction prediction
Dalkıran, Alperen, Atakan, Ahmet, Rifaioğlu, Ahmet S, Martin, Maria J, Atalay, Rengül Çetin, Acar, Aybar C, Doğan, Tunca, Atalay, Volkan
Published in Bioinformatics (Oxford, England) (30.06.2023)
Published in Bioinformatics (Oxford, England) (30.06.2023)
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Journal Article
DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c9sc03414e
Rifaioglu, Ahmet Sureyya, Nalbat, Esra, Atalay, Volkan, Martin, Maria Jesus, Cetin-Atalay, Rengul, Doğan, Tunca
Published in Chemical science (Cambridge) (08.01.2020)
Published in Chemical science (Cambridge) (08.01.2020)
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Journal Article
Leiomyoma of the vagina
ŞENYUVA, İrem, YILDIRIM, Yusuf, TANER, Cüneyt E, ATALAY, Volkan, YAMAN, Akın
Published in Gynecology, obstetrics & reproductive medicine : GORM (01.04.2008)
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Published in Gynecology, obstetrics & reproductive medicine : GORM (01.04.2008)
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