Long non‐coding RNAs in development and disease: conservation to mechanisms
Tsagakis, Ioannis, Douka, Katerina, Birds, Isabel, Aspden, Julie L
Published in The Journal of pathology (01.04.2020)
Published in The Journal of pathology (01.04.2020)
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Standardized annotation of translated open reading frames
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Published in Nature biotechnology (01.07.2022)
Published in Nature biotechnology (01.07.2022)
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Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq
Aspden, Julie L, Eyre-Walker, Ying Chen, Phillips, Rose J, Amin, Unum, Mumtaz, Muhammad Ali S, Brocard, Michele, Couso, Juan-Pablo
Published in eLife (21.08.2014)
Published in eLife (21.08.2014)
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Differences in 5'untranslated regions highlight the importance of translational regulation of dosage sensitive genes
Wieder, Nechama, D'Souza, Elston N, Martin-Geary, Alexandra C, Lassen, Frederik H, Talbot-Martin, Jonathan, Fernandes, Maria, Chothani, Sonia P, Rackham, Owen J L, Schafer, Sebastian, Aspden, Julie L, MacArthur, Daniel G, Davies, Robert W, Whiffin, Nicola
Published in Genome Biology (29.04.2024)
Published in Genome Biology (29.04.2024)
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Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression
Taliaferro, J Matthew, Aspden, Julie L, Bradley, Todd, Marwha, Dhruv, Blanchette, Marco, Rio, Donald C
Published in Genes & development (15.02.2013)
Published in Genes & development (15.02.2013)
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m6A Regulates the Stability of Cellular Transcripts Required for Efficient KSHV Lytic Replication
Manners, Oliver, Baquero-Perez, Belinda, Mottram, Timothy J., Yonchev, Ivaylo D., Trevelyan, Christopher J., Harper, Katherine L., Menezes, Sarah, Patterson, Molly R., Macdonald, Andrew, Wilson, Stuart A., Aspden, Julie L., Whitehouse, Adrian
Published in Viruses (16.06.2023)
Published in Viruses (16.06.2023)
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A segmental genomic duplication generates a functional intron
Hellsten, Uffe, Aspden, Julie L, Rio, Donald C, Rokhsar, Daniel S
Published in Nature communications (30.08.2011)
Published in Nature communications (30.08.2011)
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Cytoplasmic long noncoding RNAs are differentially regulated and translated during human neuronal differentiation
Douka, Katerina, Birds, Isabel, Wang, Dapeng, Kosteletos, Andreas, Clayton, Sophie, Byford, Abigail, Vasconcelos, Elton J.R., O'Connell, Mary J., Deuchars, Jim, Whitehouse, Adrian, Aspden, Julie L.
Published in RNA (Cambridge) (01.09.2021)
Published in RNA (Cambridge) (01.09.2021)
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Ribosome Fingerprinting with a Solid-State Nanopore
Raveendran, Mukhil, Leach, Anna Rose, Hopes, Tayah, Aspden, Julie L, Actis, Paolo
Published in ACS sensors (25.11.2020)
Published in ACS sensors (25.11.2020)
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Journal Article
m[sup.6]A Regulates the Stability of Cellular Transcripts Required for Efficient KSHV Lytic Replication
Manners, Oliver, Baquero-Perez, Belinda, Mottram, Timothy J, Yonchev, Ivaylo D, Trevelyan, Christopher J, Harper, Katherine L, Menezes, Sarah, Patterson, Molly R, Macdonald, Andrew, Wilson, Stuart A, Aspden, Julie L, Whitehouse, Adrian
Published in Viruses (01.06.2023)
Published in Viruses (01.06.2023)
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Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human
McCartney, Ann M, Hyland, Edel M, Cormican, Paul, Moran, Raymond J, Webb, Andrew E, Lee, Kate D, Hernandez-Rodriguez, Jessica, Prado-Martinez, Javier, Creevey, Christopher J, Aspden, Julie L, McInerney, James O, Marques-Bonet, Tomas, O'Connell, Mary J
Published in Genome biology and evolution (01.09.2019)
Published in Genome biology and evolution (01.09.2019)
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Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans
Brooks, Angela N, Aspden, Julie L, Podgornaia, Anna I, Rio, Donald C, Brenner, Steven E
Published in RNA (Cambridge) (01.10.2011)
Published in RNA (Cambridge) (01.10.2011)
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Journal Article
m 6 A Regulates the Stability of Cellular Transcripts Required for Efficient KSHV Lytic Replication
Manners, Oliver, Baquero-Perez, Belinda, Mottram, Timothy J, Yonchev, Ivaylo D, Trevelyan, Christopher J, Harper, Katherine L, Menezes, Sarah, Patterson, Molly R, Macdonald, Andrew, Wilson, Stuart A, Aspden, Julie L, Whitehouse, Adrian
Published in Viruses (16.06.2023)
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Published in Viruses (16.06.2023)
Journal Article
Extensive translation of small ORFs revealed by polysomal ribo-Seq
Aspden, Julie L, Ying Chen Eyre-Walker, Phillips, Rose J, Brocard, Michele, Amin, Unum, Couso, Juan
Published in bioRxiv (24.02.2014)
Published in bioRxiv (24.02.2014)
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Paper
High-quality peptide evidence for annotating non-canonical open reading frames as human proteins
Deutsch, Eric W, Kok, Leron W, Mudge, Jonathan M, Ruiz-Orera, Jorge, Fierro-Monti, Ivo, Sun, Zhi, Abelin, Jennifer G, Alba, M Mar, Aspden, Julie L, Bazzini, Ariel A, Bruford, Elspeth A, Brunet, Marie A, Calviello, Lorenzo, Carr, Steven A, Carvunis, Anne-Ruxandra, Chothani, Sonia, Clauwaert, Jim, Dean, Kellie, Faridi, Pouya, Frankish, Adam, Hubner, Norbert, Ingolia, Nicholas T, Magrane, Michele, Martin, Maria Jesus, Martinez, Thomas F, Menschaert, Gerben, Ohler, Uwe, Orchard, Sandra, Rackham, Owen, Roucou, Xavier, Slavoff, Sarah A, Valen, Eivind, Wacholder, Aaron, Weissman, Jonathan S, Wu, Wei, Xie, Zhi, Choudhary, Jyoti, Bassani-Sternberg, Michal, Vizcaíno, Juan Antonio, Ternette, Nicola, Moritz, Robert L, Prensner, John R, van Heesch, Sebastiaan
Published in bioRxiv (09.09.2024)
Published in bioRxiv (09.09.2024)
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