BioNetGen 2.2: advances in rule-based modeling
Harris, Leonard A, Hogg, Justin S, Tapia, José-Juan, Sekar, John A P, Gupta, Sanjana, Korsunsky, Ilya, Arora, Arshi, Barua, Dipak, Sheehan, Robert P, Faeder, James R
Published in Bioinformatics (Oxford, England) (01.11.2016)
Published in Bioinformatics (Oxford, England) (01.11.2016)
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Journal Article
Next-Generation Sequencing of Pulmonary Large Cell Neuroendocrine Carcinoma Reveals Small Cell Carcinoma-like and Non-Small Cell Carcinoma-like Subsets
Rekhtman, Natasha, Pietanza, Maria C, Hellmann, Matthew D, Naidoo, Jarushka, Arora, Arshi, Won, Helen, Halpenny, Darragh F, Wang, Hangjun, Tian, Shaozhou K, Litvak, Anya M, Paik, Paul K, Drilon, Alexander E, Socci, Nicholas, Poirier, John T, Shen, Ronglai, Berger, Michael F, Moreira, Andre L, Travis, William D, Rudin, Charles M, Ladanyi, Marc
Published in Clinical cancer research (15.07.2016)
Published in Clinical cancer research (15.07.2016)
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Journal Article
Adipocyte-Derived Lipids Mediate Melanoma Progression via FATP Proteins
Zhang, Maomao, Di Martino, Julie S, Bowman, Robert L, Campbell, Nathaniel R, Baksh, Sanjeethan C, Simon-Vermot, Theresa, Kim, Isabella S, Haldeman, Pearce, Mondal, Chandrani, Yong-Gonzales, Vladimir, Abu-Akeel, Mohsen, Merghoub, Taha, Jones, Drew R, Zhu, Xiphias Ge, Arora, Arshi, Ariyan, Charlotte E, Birsoy, Kivanç, Wolchok, Jedd D, Panageas, Katherine S, Hollmann, Travis, Bravo-Cordero, Jose Javier, White, Richard M
Published in Cancer discovery (01.08.2018)
Published in Cancer discovery (01.08.2018)
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Journal Article
Using somatic variant richness to mine signals from rare variants in the cancer genome
Chakraborty, Saptarshi, Arora, Arshi, Begg, Colin B., Shen, Ronglai
Published in Nature communications (03.12.2019)
Published in Nature communications (03.12.2019)
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Journal Article
Integrating Clinical and Multiple Omics Data for Prognostic Assessment across Human Cancers
Zhu, Bin, Song, Nan, Shen, Ronglai, Arora, Arshi, Machiela, Mitchell J., Song, Lei, Landi, Maria Teresa, Ghosh, Debashis, Chatterjee, Nilanjan, Baladandayuthapani, Veera, Zhao, Hongyu
Published in Scientific reports (05.12.2017)
Published in Scientific reports (05.12.2017)
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Journal Article
Pan-cancer identification of clinically relevant genomic subtypes using outcome-weighted integrative clustering
Arora, Arshi, Olshen, Adam B, Seshan, Venkatraman E, Shen, Ronglai
Published in Genome medicine (03.12.2020)
Published in Genome medicine (03.12.2020)
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Journal Article
An IRAK1–PIN1 signalling axis drives intrinsic tumour resistance to radiation therapy
Liu, Peter H., Shah, Richa B., Li, Yuanyuan, Arora, Arshi, Ung, Peter Man-Un, Raman, Renuka, Gorbatenko, Andrej, Kozono, Shingo, Zhou, Xiao Zhen, Brechin, Vincent, Barbaro, John M., Thompson, Ruth, White, Richard M., Aguirre-Ghiso, Julio A., Heymach, John V., Lu, Kun Ping, Silva, Jose M., Panageas, Katherine S., Schlessinger, Avner, Maki, Robert G., Skinner, Heath D., de Stanchina, Elisa, Sidi, Samuel
Published in Nature cell biology (01.02.2019)
Published in Nature cell biology (01.02.2019)
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Journal Article
COMT, BDNF, and DTNBP1 polymorphisms and cognitive functions in patients with brain tumors
Correa, Denise D, Satagopan, Jaya, Cheung, Kenneth, Arora, Arshi K, Kryza-Lacombe, Maria, Xu, Youming, Karimi, Sasan, Lyo, John, DeAngelis, Lisa M, Orlow, Irene
Published in Neuro-oncology (Charlottesville, Va.) (01.10.2016)
Published in Neuro-oncology (Charlottesville, Va.) (01.10.2016)
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Journal Article
Community-wide hackathons to identify central themes in single-cell multi-omics
Lê Cao, Kim-Anh, Abadi, Al J, Davis-Marcisak, Emily F, Hsu, Lauren, Arora, Arshi, Coullomb, Alexis, Deshpande, Atul, Feng, Yuzhou, Jeganathan, Pratheepa, Loth, Melanie, Meng, Chen, Mu, Wancen, Pancaldi, Vera, Sankaran, Kris, Righelli, Dario, Singh, Amrit, Sodicoff, Joshua S, Stein-O'Brien, Genevieve L, Subramanian, Ayshwarya, Welch, Joshua D, You, Yue, Argelaguet, Ricard, Carey, Vincent J, Dries, Ruben, Greene, Casey S, Holmes, Susan, Love, Michael I, Ritchie, Matthew E, Yuan, Guo-Cheng, Culhane, Aedin C, Fertig, Elana
Published in Genome Biology (05.08.2021)
Published in Genome Biology (05.08.2021)
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Journal Article
Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics
Cao, Kim-Anh Lê, Abadi, Al J, Davis-Marcisak, Emily F, Hsu, Lauren, Arora, Arshi, Coullomb, Alexis, Deshpande, Atul, Feng, Yuzhou, Jeganathan, Pratheepa, Loth, Melanie, Meng, Chen, Mu, Wancen, Pancaldi, Vera, Sankaran, Kris, Righelli, Dario, Singh, Amrit, Sodicoff, Joshua S, Stein-O'Brien, Genevieve L, Subramanian, Ayshwarya, Welch, Joshua D, You, Yue, Argelaguet, Ricard, Carey, Vincent J, Dries, Ruben, Greene, Casey S, Holmes, Susan, Love, Michael I, Ritchie, Matthew E, Yuan, Guo-Cheng, Culhane, Aedin C, Fertig, Elana
Published in Genome Biology (25.08.2021)
Published in Genome Biology (25.08.2021)
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Journal Article
The mitogen-activated protein kinome from Anopheles gambiae: identification, phylogeny and functional characterization of the ERK, JNK and p38 MAP kinases
Horton, Ashley A, Wang, Bo, Camp, Lauren, Price, Mark S, Arshi, Arora, Nagy, Mate, Nadler, Steven A, Faeder, James R, Luckhart, Shirley
Published in BMC genomics (23.11.2011)
Published in BMC genomics (23.11.2011)
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Journal Article
P1227: COMPREHENSIVE MOLECULAR SUBTYPING OF DIFFUSE LARGE B‐CELL LYMPHOMA CELL LINES AND ASSOCIATION WITH TAFASITAMAB ACTIVITY
Arora, Arshi, Patra‐Kneuer, Maria, Chang, Gaomei, Kuffer, Christian, Grau, Michael, Zapukhlyak, Myroslav, Blair, Derek, Ilieva, Kristina, Heitmueller, Christina, Lenz, Georg, Schaffer, Michael, Alvarez Arias, Diana
Published in HemaSphere (08.08.2023)
Published in HemaSphere (08.08.2023)
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Journal Article
Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density
Coronnello, Claudia, Hartmaier, Ryan, Arora, Arshi, Huleihel, Luai, Pandit, Kusum V, Bais, Abha S, Butterworth, Michael, Kaminski, Naftali, Stormo, Gary D, Oesterreich, Steffi, Benos, Panayiotis V
Published in PLoS computational biology (01.12.2012)
Published in PLoS computational biology (01.12.2012)
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Journal Article
878 T cell immunotherapies recruit and activate neutrophils to eliminate tumor antigen escape variants
Hirschhorn, Daniel, Budhu, Sadna, Kraehenbuehl, Lukas, Gigoux, Mathieu, Schröder, David, Chow, Andrew, Ricca, Jacob M, Gasmi, Billel, De Henau, Olivier, Mangarin, Levi Mark B, Li, Yanyun, Flamar, Anne-Laure, Choi, Heyjin, Cortez, Czrina A, Liu, Cailian, Holland, Aliya, Schad, Sara, Schulze, Isabell, Hamadene, Linda, Warner, Allison Betof, Hollmann, Travis, Arora, Arshi, Panageas, Katherine S, Duhen, Rebekka, Weinberg, Andrew D, Rizzuto, Gabrielle A, Spencer, Christine N, Ng, David, He, Xue-Yan, Albrengues, Jean, Redmond, David, Egeblad, Mikala, Wolchok, Jedd D, Merghoub, Taha
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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Journal Article
Sunburn, sun exposure, and sun sensitivity in the Study of Nevi in Children
Satagopan, Jaya M., PhD, Oliveria, Susan A., PhD, Arora, Arshi, MS, Marchetti, Michael A., MD, Orlow, Irene, PhD, Dusza, Stephen W., DrPH, Weinstock, Martin A., MD, PhD, Scope, Alon, PhD, Geller, Alan C., MPH, RN, Marghoob, Ashfaq A., MD, Halpern, Allan C., MD, MS
Published in Annals of epidemiology (01.11.2015)
Published in Annals of epidemiology (01.11.2015)
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Journal Article
T cell immunotherapies engage neutrophils to eliminate tumor antigen escape variants
Hirschhorn, Daniel, Budhu, Sadna, Kraehenbuehl, Lukas, Gigoux, Mathieu, Schröder, David, Chow, Andrew, Ricca, Jacob M., Gasmi, Billel, De Henau, Olivier, Mangarin, Levi Mark B., Li, Yanyun, Hamadene, Linda, Flamar, Anne-Laure, Choi, Hyejin, Cortez, Czrina A., Liu, Cailian, Holland, Aliya, Schad, Sara, Schulze, Isabell, Betof Warner, Allison, Hollmann, Travis J., Arora, Arshi, Panageas, Katherine S., Rizzuto, Gabrielle A., Duhen, Rebekka, Weinberg, Andrew D., Spencer, Christine N., Ng, David, He, Xue-Yan, Albrengues, Jean, Redmond, David, Egeblad, Mikala, Wolchok, Jedd D., Merghoub, Taha
Published in Cell (30.03.2023)
Published in Cell (30.03.2023)
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Journal Article
Next-Generation Sequencing of Stage IV Squamous Cell Lung Cancers Reveals an Association of PI3K Aberrations and Evidence of Clonal Heterogeneity in Patients with Brain Metastases
Paik, Paul K, Shen, Ronglai, Won, Helen, Rekhtman, Natasha, Wang, Lu, Sima, Camelia S, Arora, Arshi, Seshan, Venkatraman, Ladanyi, Marc, Berger, Michael F, Kris, Mark G
Published in Cancer discovery (01.06.2015)
Published in Cancer discovery (01.06.2015)
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Journal Article
Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles
Gingras, Marie-Claude, Shih, Juliann, Hinoue, Toshinori, Hoadley, Katherine A., Gibb, Ewan A., Covington, Kyle R., Sadeghi, Sara, Pedamallu, Chandra Sekhar, Auman, J. Todd, Andersen, Jesper B., Bardeesy, Nabeel, Berrios, Mario, Bodenheimer, Tom, Boice, Lori, Bootwalla, Moiz S., Bowlby, Reanne, Bragazzi, Maria Consiglia, Cardinale, Vincenzo, Carlsen, Rebecca, Carpino, Guido, Chaiteerakij, Roongruedee, Chandan, Vishal C., Cherniack, Andrew D., Cho, Juok, Chuah, Eric, Chudamani, Sudha, Cordes, Matthew G., Covington, Kyle R., Crain, Daniel, Curley, Erin, De Rose, Agostino Maria, Defreitas, Timothy, Demchok, John A., Ferguson, Martin L., Foo, Wai Chin, Franchitto, Antonio, Frazer, Scott, Fulton, Lucinda A., Gardner, Johanna, Gastier-Foster, Julie M., Gehlenborg, Nils, Genovese, Giannicola, Giama, Nasra H., Hegde, Apurva M., Heiman, David I., Holbrook, Andrea, Holt, Robert A., Hoyle, Alan P., Jefferys, Stuart R., Jones, Steven J.M., Kasaian, Katayoon, Kwong, Lawrence N., Lai, Phillip H., Liu, Wenbin, Lolla, Laxmi, Lu, Yiling, Mardis, Elaine R., Matsushita, Marcus M., Mayo, Michael, McLellan, Michael D., Meier, Sam, Mounajjed, Taofic, Naresh, Rashi, Newton, Yulia, Noble, Michael S., Ojesina, Akinyemi I., Parker, Joel S., Patel, Tushar C., Pihl, Todd, Radenbaugh, Amie J., Ramirez, Nilsa C., Reznik, Ed, Robertson, A. Gordon, Saksena, Gordon, Schein, Jacqueline E., Schmidt, Heather K., Shelton, Troy, Shroff, Rachna, Simons, Janae V., Skelly, Tara, Stransky, Nicolas, Tan, Donghui, Thiessen, Nina, Veluvolu, Umadevi, Verhaak, Roel G.W., Wang, Zhining, Weinstein, John N., Wilson, Richard K., Wu, Chia-Chin, Yang, Liming, Zmuda, Erik, Stuart, Josh M., Sander, Chris, Cherniack, Andrew D., Mounajjed, Taofic, Foo, Wai Chin, Laird, Peter W., Wheeler, David A., Roberts, Lewis R., Kwong, Lawrence N.
Published in Cell reports (Cambridge) (14.03.2017)
Published in Cell reports (Cambridge) (14.03.2017)
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Journal Article
LAG-3 expression on peripheral blood cells identifies patients with poorer outcomes after immune checkpoint blockade
Shen, Ronglai, Postow, Michael A, Adamow, Matthew, Arora, Arshi, Hannum, Margaret, Maher, Colleen, Wong, Phillip, Curran, Michael A, Hollmann, Travis J, Jia, Liwei, Al-Ahmadie, Hikmat, Keegan, Niamh, Funt, Samuel A, Iyer, Gopa, Rosenberg, Jonathan E, Bajorin, Dean F, Chapman, Paul B, Shoushtari, Alexander N, Betof, Allison S, Momtaz, Parisa, Merghoub, Taha, Wolchok, Jedd D, Panageas, Katherine S, Callahan, Margaret K
Published in Science translational medicine (25.08.2021)
Published in Science translational medicine (25.08.2021)
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Journal Article
Comparative genomics of primary prostate cancer and paired metastases: insights from 12 molecular case studies
Cyrta, Joanna, Prandi, Davide, Arora, Arshi, Hovelson, Daniel H, Sboner, Andrea, Rodriguez, Antonio, Fedrizzi, Tarcisio, Beltran, Himisha, Robinson, Dan R, Gopalan, Anuradha, True, Lawrence, Nelson, Peter S, Robinson, Brian D, Mosquera, Juan Miguel, Tomlins, Scott A, Shen, Ronglai, Demichelis, Francesca, Rubin, Mark A
Published in The Journal of pathology (01.07.2022)
Published in The Journal of pathology (01.07.2022)
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