Histone dynamics mediate DNA unwrapping and sliding in nucleosomes
Armeev, Grigoriy A, Kniazeva, Anastasiia S, Komarova, Galina A, Kirpichnikov, Mikhail P, Shaytan, Alexey K
Published in Nature communications (22.04.2021)
Published in Nature communications (22.04.2021)
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Journal Article
Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions
Shaytan, Alexey K., Armeev, Grigoriy A., Goncearenco, Alexander, Zhurkin, Victor B., Landsman, David, Panchenko, Anna R.
Published in Journal of molecular biology (16.01.2016)
Published in Journal of molecular biology (16.01.2016)
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Journal Article
HSP70 Multi-Functionality in Cancer
Albakova, Zarema, Armeev, Grigoriy A, Kanevskiy, Leonid M, Kovalenko, Elena I, Sapozhnikov, Alexander M
Published in Cells (Basel, Switzerland) (02.03.2020)
Published in Cells (Basel, Switzerland) (02.03.2020)
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Journal Article
CPE-DB: An Open Database of Chemical Penetration Enhancers
Vasyuchenko, Ekaterina P, Orekhov, Philipp S, Armeev, Grigoriy A, Bozdaganyan, Marine E
Published in Pharmaceutics (07.01.2021)
Published in Pharmaceutics (07.01.2021)
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Journal Article
Large-scale ATP-independent nucleosome unfolding by a histone chaperone
Valieva, Maria E, Armeev, Grigoriy A, Kudryashova, Kseniya S, Gerasimova, Nadezhda S, Shaytan, Alexey K, Kulaeva, Olga I, McCullough, Laura L, Formosa, Tim, Georgiev, Pavel G, Kirpichnikov, Mikhail P, Studitsky, Vasily M, Feofanov, Alexey V
Published in Nature structural & molecular biology (01.12.2016)
Published in Nature structural & molecular biology (01.12.2016)
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Journal Article
Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning
Shaytan, Alexey K, Xiao, Hua, Armeev, Grigoriy A, Wu, Carl, Landsman, David, Panchenko, Anna R
Published in Nucleic acids research (19.09.2017)
Published in Nucleic acids research (19.09.2017)
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Journal Article
H2A-H2B Histone Dimer Plasticity and Its Functional Implications
Kniazeva, Anastasiia S, Armeev, Grigoriy A, Shaytan, Alexey K
Published in Cells (Basel, Switzerland) (01.09.2022)
Published in Cells (Basel, Switzerland) (01.09.2022)
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Journal Article
Interactions of Nucleosomes with Acidic Patch-Binding Peptides: A Combined Structural Bioinformatics, Molecular Modeling, Fluorescence Polarization, and Single-Molecule FRET Study
Oleinikov, Pavel D, Fedulova, Anastasiia S, Armeev, Grigoriy A, Motorin, Nikita A, Singh-Palchevskaia, Lovepreet, Sivkina, Anastasiia L, Feskin, Pavel G, Glukhov, Grigory S, Afonin, Dmitry A, Komarova, Galina A, Kirpichnikov, Mikhail P, Studitsky, Vasily M, Feofanov, Alexey V, Shaytan, Alexey K
Published in International journal of molecular sciences (01.10.2023)
Published in International journal of molecular sciences (01.10.2023)
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Journal Article
Viral rhodopsins 1 are an unique family of light-gated cation channels
Zabelskii, Dmitrii, Alekseev, Alexey, Kovalev, Kirill, Rankovic, Vladan, Balandin, Taras, Soloviov, Dmytro, Bratanov, Dmitry, Savelyeva, Ekaterina, Podolyak, Elizaveta, Volkov, Dmytro, Vaganova, Svetlana, Astashkin, Roman, Chizhov, Igor, Yutin, Natalia, Rulev, Maksim, Popov, Alexander, Eria-Oliveira, Ana-Sofia, Rokitskaya, Tatiana, Mager, Thomas, Antonenko, Yuri, Rosselli, Riccardo, Armeev, Grigoriy, Shaitan, Konstantin, Vivaudou, Michel, Büldt, Georg, Rogachev, Andrey, Rodriguez-Valera, Francisco, Kirpichnikov, Mikhail, Moser, Tobias, Offenhäusser, Andreas, Willbold, Dieter, Koonin, Eugene, Bamberg, Ernst, Gordeliy, Valentin
Published in Nature communications (11.11.2020)
Published in Nature communications (11.11.2020)
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Journal Article
Nucleosomes and their complexes in the cryoEM era: Trends and limitations
Armeev, Grigoriy A, Gribkova, Anna K, Shaytan, Alexey K
Published in Frontiers in molecular biosciences (24.11.2022)
Published in Frontiers in molecular biosciences (24.11.2022)
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Journal Article
Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID
Shaytan, Alexey K, Xiao, Hua, Armeev, Grigoriy A, Gaykalova, Daria A, Komarova, Galina A, Wu, Carl, Studitsky, Vasily M, Landsman, David, Panchenko, Anna R
Published in Nature protocols (01.11.2018)
Published in Nature protocols (01.11.2018)
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Journal Article
Abstract P-5: Neural Network Approaches to Classify 3D Protein Structures from the Data of X-ray Laser Radiation Diffraction from Single Particles
Novoseletsky, Valery, Lozhnikov, Mikhail, Armeev, Grigoriy, Kudriavtsev, Aleksandr, Shaytan, Alexey, Kobelkov, Georgiy, Shaitan, Konstantin
Published in International journal of biomedicine (20.06.2021)
Published in International journal of biomedicine (20.06.2021)
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Journal Article
Abstract P-49: Determination of Relative Positions of Two Helices in Two-Helical Proteins Basing on X-ray Diffraction Data with the Use of Convolutional Neural Networks
Novoseletsky, Valery, Lozhnikov, Mikhail, Armeev, Grigoriy, Kudriavtsev, Alexandr, Shaytan, Alexey, Kobelkov, Georgy, Shaitan, Konstantin
Published in International journal of biomedicine (30.06.2019)
Published in International journal of biomedicine (30.06.2019)
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Journal Article
6 Combined influence of linker DNA and histone tails on nucleosome dynamics as revealed by microsecond molecular dynamics simulations
Shaytan, Alexey K., Armeev, Grigoriy A., Goncearenco, Alexander, Zhurkin, Victor B., Landsman, David, Panchenko, Anna R.
Published in Journal of biomolecular structure & dynamics (18.05.2015)
Published in Journal of biomolecular structure & dynamics (18.05.2015)
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Journal Article
Abstract OR-19: Integrative Approach on Nucleosome Complexes Modeling
Armeev, Grigoriy, Panchenko, Anna, Shaytan, Alexey
Published in International journal of biomedicine (30.06.2019)
Published in International journal of biomedicine (30.06.2019)
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Journal Article
Abstract P-19: 15-Microsecond Molecular Dynamics Simulations of Nucleosome Show Structural Heterogeneity and Plasticity
Armeev, Grigoriy, Kniazeva, Anastasiia, Komarova, Galina, Kirpichnikov, Mikhail, Shaytan, Alexey
Published in International journal of biomedicine (20.06.2021)
Published in International journal of biomedicine (20.06.2021)
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