Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes
Armand, Ethan J, Li, Junhao, Xie, Fangming, Luo, Chongyuan, Mukamel, Eran A
Published in Neuron (Cambridge, Mass.) (06.01.2021)
Published in Neuron (Cambridge, Mass.) (06.01.2021)
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Journal Article
Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
Luo, Chongyuan, Liu, Hanqing, Xie, Fangming, Armand, Ethan J., Siletti, Kimberly, Bakken, Trygve E., Fang, Rongxin, Doyle, Wayne I., Stuart, Tim, Hodge, Rebecca D., Hu, Lijuan, Wang, Bang-An, Zhang, Zhuzhu, Preissl, Sebastian, Lee, Dong-Sung, Zhou, Jingtian, Niu, Sheng-Yong, Castanon, Rosa, Bartlett, Anna, Rivkin, Angeline, Wang, Xinxin, Lucero, Jacinta, Nery, Joseph R., Davis, David A., Mash, Deborah C., Satija, Rahul, Dixon, Jesse R., Linnarsson, Sten, Lein, Ed, Behrens, M. Margarita, Ren, Bing, Mukamel, Eran A., Ecker, Joseph R.
Published in Cell genomics (09.03.2022)
Published in Cell genomics (09.03.2022)
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Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues
Chang, Lei, Xie, Yang, Taylor, Brett, Wang, Zhaoning, Sun, Jiachen, Armand, Ethan J, Mishra, Shreya, Xu, Jie, Tastemel, Melodi, Lie, Audrey, Gibbs, Zane A, Indralingam, Hannah S, Tan, Tuyet M, Bejar, Rafael, Chen, Clark C, Furnari, Frank B, Hu, Ming, Ren, Bing
Published in Nature biotechnology (18.10.2024)
Published in Nature biotechnology (18.10.2024)
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Journal Article
Conserved and divergent gene regulatory programs of the mammalian neocortex
Zemke, Nathan R., Armand, Ethan J., Wang, Wenliang, Lee, Seoyeon, Zhou, Jingtian, Li, Yang Eric, Liu, Hanqing, Tian, Wei, Nery, Joseph R., Castanon, Rosa G., Bartlett, Anna, Osteen, Julia K., Li, Daofeng, Zhuo, Xiaoyu, Xu, Vincent, Chang, Lei, Dong, Keyi, Indralingam, Hannah S., Rink, Jonathan A., Xie, Yang, Miller, Michael, Krienen, Fenna M., Zhang, Qiangge, Taskin, Naz, Ting, Jonathan, Feng, Guoping, McCarroll, Steven A., Callaway, Edward M., Wang, Ting, Lein, Ed S., Behrens, M. Margarita, Ecker, Joseph R., Ren, Bing
Published in Nature (London) (14.12.2023)
Published in Nature (London) (14.12.2023)
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Journal Article
Single-cell analysis of chromatin accessibility in the adult mouse brain
Zu, Songpeng, Li, Yang Eric, Wang, Kangli, Armand, Ethan J., Mamde, Sainath, Amaral, Maria Luisa, Wang, Yuelai, Chu, Andre, Xie, Yang, Miller, Michael, Xu, Jie, Wang, Zhaoning, Zhang, Kai, Jia, Bojing, Hou, Xiaomeng, Lin, Lin, Yang, Qian, Lee, Seoyeon, Li, Bin, Kuan, Samantha, Liu, Hanqing, Zhou, Jingtian, Pinto-Duarte, Antonio, Lucero, Jacinta, Osteen, Julia, Nunn, Michael, Smith, Kimberly A., Tasic, Bosiljka, Yao, Zizhen, Zeng, Hongkui, Wang, Zihan, Shang, Jingbo, Behrens, M. Margarita, Ecker, Joseph R., Wang, Allen, Preissl, Sebastian, Ren, Bing
Published in Nature (London) (14.12.2023)
Published in Nature (London) (14.12.2023)
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Journal Article
Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex
Zemke, Nathan R., Armand, Ethan J., Wang, Wenliang, Lee, Seoyeon, Zhou, Jingtian, Li, Yang Eric, Liu, Hanqing, Tian, Wei, Nery, Joseph R., Castanon, Rosa G., Bartlett, Anna, Osteen, Julia K., Li, Daofeng, Zhuo, Xiaoyu, Xu, Vincent, Chang, Lei, Dong, Keyi, Indralingam, Hannah S., Rink, Jonathan A., Xie, Yang, Miller, Michael, Krienen, Fenna M., Zhang, Qiangge, Taskin, Naz, Ting, Jonathan, Feng, Guoping, McCarroll, Steven A., Callaway, Edward M., Wang, Ting, Lein, Ed S., Behrens, M. Margarita, Ecker, Joseph R., Ren, Bing
Published in Nature (London) (25.01.2024)
Published in Nature (London) (25.01.2024)
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Journal Article
Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes
Xie, Fangming, Armand, Ethan J., Yao, Zizhen, Liu, Hanqing, Bartlett, Anna, Behrens, M. Margarita, Li, Yang Eric, Lucero, Jacinta D., Luo, Chongyuan, Nery, Joseph R., Pinto-Duarte, Antonio, Poirion, Olivier B., Preissl, Sebastian, Rivkin, Angeline C., Tasic, Bosiljka, Zeng, Hongkui, Ren, Bing, Ecker, Joseph R., Mukamel, Eran A.
Published in Cell genomics (12.07.2023)
Published in Cell genomics (12.07.2023)
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Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex
Johansen, Nelson J, Kempynck, Niklas, Zemke, Nathan R, Somasundaram, Saroja, Winter, Seppe De, Hooper, Marcus, Dwivedi, Deepanjali, Lohia, Ruchi, Wehbe, Fabien, Li, Bocheng, Abaffyová, Darina, Armand, Ethan J, Man, Julie De, Eksi, Eren Can, Hecker, Nikolai, Hulselmans, Gert, Konstantakos, Vasilis, Mauduit, David, Mich, John K, Partel, Gabriele, Daigle, Tanya L, Levi, Boaz P, Zhang, Kai, Tanaka, Yoshiaki, Gillis, Jesse, Ting, Jonathan T, Ben-Simon, Yoav, Miller, Jeremy, Ecker, Joseph R, Ren, Bing, Aerts, Stein, Lein, Ed S, Tasic, Bosiljka, Bakken, Trygve E
Published in bioRxiv (21.08.2024)
Published in bioRxiv (21.08.2024)
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Journal Article
SnapATAC2: a fast, scalable and versatile tool for analysis of single-cell omics data
Zhang, Kai, Zemke, Nathan R, Armand, Ethan J, Ren, Bing
Published in bioRxiv : the preprint server for biology (15.09.2023)
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Published in bioRxiv : the preprint server for biology (15.09.2023)
Journal Article
Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex
Zemke, Nathan R, Armand, Ethan J, Wang, Wenliang, Lee, Seoyeon, Zhou, Jingtian, Li, Yang Eric, Liu, Hanqing, Tian, Wei, Nery, Joseph R, Castanon, Rosa G, Bartlett, Anna, Osteen, Julia K, Li, Daofeng, Zhuo, Xiaoyu, Xu, Vincent, Miller, Michael, Krienen, Fenna M, Zhang, Qiangge, Taskin, Naz, Ting, Jonathan, Feng, Guoping, McCarroll, Steven A, Callaway, Edward M, Wang, Ting, Behrens, M Margarita, Lein, Ed S, Ecker, Joseph R, Ren, Bing
Published in bioRxiv : the preprint server for biology (08.04.2023)
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Published in bioRxiv : the preprint server for biology (08.04.2023)
Journal Article
Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants
Luo, Chongyuan, Liu, Hanqing, Xie, Fangming, Armand, Ethan J, Siletti, Kimberly, Bakken, Trygve, Fang, Rongxin, Doyle, Wayne I, Hodge, Rebecca D, Hu, Lijuan, Bang-An, Wang, Zhang, Zhuzhu, Preissl, Sebastian, Dong-Sung, Lee, Zhou, Jingtian, Sheng-Yong Niu, Castanon, Rosa, Bartlett, Anna, Rivkin, Angeline, Wang, Xinxin, Lucero, Jacinta, Nery, Joseph R, Davis, David A, Mash, Deborah C, Dixon, Jesse R, Linnarsson, Sten, Lein, Ed, Behrens, M Margarita, Ren, Bing, Mukamel, Eran A, Ecker, Joseph R
Published in bioRxiv (12.12.2019)
Published in bioRxiv (12.12.2019)
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