A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming
Ning, Daliang, Yuan, Mengting, Wu, Linwei, Zhang, Ya, Guo, Xue, Zhou, Xishu, Yang, Yunfeng, Arkin, Adam P., Firestone, Mary K., Zhou, Jizhong
Published in Nature communications (18.09.2020)
Published in Nature communications (18.09.2020)
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Journal Article
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
Qi, Lei S., Larson, Matthew H., Gilbert, Luke A., Doudna, Jennifer A., Weissman, Jonathan S., Arkin, Adam P., Lim, Wendell A.
Published in Cell (28.02.2013)
Published in Cell (28.02.2013)
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Journal Article
Deciphering microbial interactions in synthetic human gut microbiome communities
Venturelli, Ophelia S, Carr, Alex V, Fisher, Garth, Hsu, Ryan H, Lau, Rebecca, Bowen, Benjamin P, Hromada, Susan, Northen, Trent, Arkin, Adam P
Published in Molecular systems biology (01.06.2018)
Published in Molecular systems biology (01.06.2018)
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Journal Article
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
Zhou, Jizhong, Deng, Ye, Zhang, Ping, Xue, Kai, Liang, Yuting, Van Nostrand, Joy D, Yang, Yunfeng, He, Zhili, Wu, Liyou, Stahl, David A, Hazen, Terry C, Tiedje, James M, Arkin, Adam P
Published in Proceedings of the National Academy of Sciences - PNAS (04.03.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (04.03.2014)
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Journal Article
Precise and reliable gene expression via standard transcription and translation initiation elements
Mutalik, Vivek K, Guimaraes, Joao C, Cambray, Guillaume, Lam, Colin, Christoffersen, Marc Juul, Mai, Quynh-Anh, Tran, Andrew B, Paull, Morgan, Keasling, Jay D, Arkin, Adam P, Endy, Drew
Published in Nature methods (01.04.2013)
Published in Nature methods (01.04.2013)
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Journal Article
Composability of regulatory sequences controlling transcription and translation in Escherichia coli
Kosuri, Sriram, Goodman, Daniel B., Cambray, Guillaume, Mutalik, Vivek K., Gao, Yuan, Arkin, Adam P., Endy, Drew, Church, George M.
Published in Proceedings of the National Academy of Sciences - PNAS (20.08.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (20.08.2013)
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Journal Article
Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation
Zhang, Shuyan, Ito, Masakazu, Skerker, Jeffrey M., Arkin, Adam P., Rao, Christopher V.
Published in Applied microbiology and biotechnology (01.11.2016)
Published in Applied microbiology and biotechnology (01.11.2016)
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Journal Article
Quantifying the local adaptive landscape of a nascent bacterial community
Ascensao, Joao A., Wetmore, Kelly M., Good, Benjamin H., Arkin, Adam P., Hallatschek, Oskar
Published in Nature communications (16.01.2023)
Published in Nature communications (16.01.2023)
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Journal Article
Engineering Rhodosporidium toruloides for increased lipid production
Zhang, Shuyan, Skerker, Jeffrey M., Rutter, Charles D., Maurer, Matthew J., Arkin, Adam P., Rao, Christopher V.
Published in Biotechnology and bioengineering (01.05.2016)
Published in Biotechnology and bioengineering (01.05.2016)
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Journal Article
A method for achieving complete microbial genomes and improving bins from metagenomics data
Lui, Lauren M, Nielsen, Torben N, Arkin, Adam P
Published in PLoS computational biology (07.05.2021)
Published in PLoS computational biology (07.05.2021)
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Journal Article
High-throughput mapping of the phage resistance landscape in E. coli
Mutalik, Vivek K, Adler, Benjamin A, Rishi, Harneet S, Piya, Denish, Zhong, Crystal, Koskella, Britt, Kutter, Elizabeth M, Calendar, Richard, Novichkov, Pavel S, Price, Morgan N, Deutschbauer, Adam M, Arkin, Adam P
Published in PLoS biology (13.10.2020)
Published in PLoS biology (13.10.2020)
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Journal Article
The essential gene set of a photosynthetic organism
Rubin, Benjamin E., Wetmore, Kelly M., Price, Morgan N., Diamond, Spencer, Shultzaberger, Ryan K., Lowe, Laura C., Curtin, Genevieve, Arkin, Adam P., Deutschbauer, Adam, Golden, Susan S.
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2015)
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Journal Article
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
Lucks, Julius B, Mortimer, Stefanie A, Trapnell, Cole, Luo, Shujun, Aviran, Sharon, Schroth, Gary P, Pachter, Lior, Doudna, Jennifer A, Arkin, Adam P
Published in Proceedings of the National Academy of Sciences - PNAS (05.07.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (05.07.2011)
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Journal Article
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
Oakes, Benjamin L., Fellmann, Christof, Rishi, Harneet, Taylor, Kian L., Ren, Shawn M., Nadler, Dana C., Yokoo, Rayka, Arkin, Adam P., Doudna, Jennifer A., Savage, David F.
Published in Cell (10.01.2019)
Published in Cell (10.01.2019)
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Journal Article
Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons
Wetmore, Kelly M, Price, Morgan N, Waters, Robert J, Lamson, Jacob S, He, Jennifer, Hoover, Cindi A, Blow, Matthew J, Bristow, James, Butland, Gareth, Arkin, Adam P, Deutschbauer, Adam
Published in mBio (12.05.2015)
Published in mBio (12.05.2015)
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Journal Article
Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity
Tian, Renmao, Ning, Daliang, He, Zhili, Zhang, Ping, Spencer, Sarah J, Gao, Shuhong, Shi, Weiling, Wu, Linwei, Zhang, Ya, Yang, Yunfeng, Adams, Benjamin G, Rocha, Andrea M, Detienne, Brittny L, Lowe, Kenneth A, Joyner, Dominique C, Klingeman, Dawn M, Arkin, Adam P, Fields, Matthew W, Hazen, Terry C, Stahl, David A, Alm, Eric J, Zhou, Jizhong
Published in Microbiome (06.04.2020)
Published in Microbiome (06.04.2020)
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