Precision engineering for PRRSV resistance in pigs: Macrophages from genome edited pigs lacking CD163 SRCR5 domain are fully resistant to both PRRSV genotypes while maintaining biological function
Burkard, Christine, Lillico, Simon G, Reid, Elizabeth, Jackson, Ben, Mileham, Alan J, Ait-Ali, Tahar, Whitelaw, C Bruce A, Archibald, Alan L
Published in PLoS pathogens (23.02.2017)
Published in PLoS pathogens (23.02.2017)
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Illuminating the dark side of the human transcriptome with long read transcript sequencing
Kuo, Richard I, Cheng, Yuanyuan, Zhang, Runxuan, Brown, John W S, Smith, Jacqueline, Archibald, Alan L, Burt, David W
Published in BMC genomics (30.10.2020)
Published in BMC genomics (30.10.2020)
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Livestock 2.0 - genome editing for fitter, healthier, and more productive farmed animals
Tait-Burkard, Christine, Doeschl-Wilson, Andrea, McGrew, Mike J, Archibald, Alan L, Sang, Helen M, Houston, Ross D, Whitelaw, C Bruce, Watson, Mick
Published in Genome Biology (26.11.2018)
Published in Genome Biology (26.11.2018)
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Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human
Kuo, Richard I, Tseng, Elizabeth, Eory, Lel, Paton, Ian R, Archibald, Alan L, Burt, David W
Published in BMC genomics (24.04.2017)
Published in BMC genomics (24.04.2017)
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Strong signatures of selection in the domestic pig genome
Rubin, Carl-Johan, Megens, Hendrik-Jan, Barrio, Alvaro Martinez, Maqbool, Khurram, Sayyab, Shumaila, Schwochow, Doreen, Wang, Chao, Carlborg, Örjan, Jern, Patric, Jørgensen, Claus B, Archibald, Alan L, Fredholm, Merete, Groenen, Martien A. M, Andersson, Leif
Published in Proceedings of the National Academy of Sciences - PNAS (27.11.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (27.11.2012)
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A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas
Peñaloza, Carolina, Gutierrez, Alejandro P, Eöry, Lél, Wang, Shan, Guo, Ximing, Archibald, Alan L, Bean, Tim P, Houston, Ross D
Published in Gigascience (25.03.2021)
Published in Gigascience (25.03.2021)
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A high resolution atlas of gene expression in the domestic sheep (Ovis aries)
Clark, Emily L, Bush, Stephen J, McCulloch, Mary E B, Farquhar, Iseabail L, Young, Rachel, Lefevre, Lucas, Pridans, Clare, Tsang, Hiu G, Wu, Chunlei, Afrasiabi, Cyrus, Watson, Mick, Whitelaw, C Bruce, Freeman, Tom C, Summers, Kim M, Archibald, Alan L, Hume, David A
Published in PLoS genetics (15.09.2017)
Published in PLoS genetics (15.09.2017)
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Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication
Dutta, Prasun, Talenti, Andrea, Young, Rachel, Jayaraman, Siddharth, Callaby, Rebecca, Jadhav, Santosh Kumar, Dhanikachalam, Velu, Manikandan, Mayakannan, Biswa, Bhim B., Low, Wai Y., Williams, John L., Cook, Elizabeth, Toye, Phil, Wall, Eileen, Djikeng, Appolinaire, Marshall, Karen, Archibald, Alan L., Gokhale, Suresh, Kumar, Satish, Hume, David A., Prendergast, James G. D.
Published in Nature communications (21.09.2020)
Published in Nature communications (21.09.2020)
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A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content
Tortereau, Flavie, Servin, Bertrand, Frantz, Laurent, Megens, Hendrik-Jan, Milan, Denis, Rohrer, Gary, Wiedmann, Ralph, Beever, Jonathan, Archibald, Alan L, Schook, Lawrence B, Groenen, Martien A M
Published in BMC genomics (15.11.2012)
Published in BMC genomics (15.11.2012)
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Signatures of diversifying selection in European pig breeds
Wilkinson, Samantha, Lu, Zen H, Megens, Hendrik-Jan, Archibald, Alan L, Haley, Chris, Jackson, Ian J, Groenen, Martien A M, Crooijmans, Richard P M A, Ogden, Rob, Wiener, Pamela
Published in PLoS genetics (01.04.2013)
Published in PLoS genetics (01.04.2013)
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Lawsonia intracellularis exploits β-catenin/Wnt and Notch signalling pathways during infection of intestinal crypt to alter cell homeostasis and promote cell proliferation
Huan, Yang W, Bengtsson, Rebecca J, MacIntyre, Neil, Guthrie, Jack, Finlayson, Heather, Smith, Sionagh H, Archibald, Alan L, Ait-Ali, Tahar
Published in PloS one (21.03.2017)
Published in PloS one (21.03.2017)
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Comparative analysis of monocyte subsets in the pig
Fairbairn, Lynsey, Kapetanovic, Ronan, Beraldi, Dario, Sester, David P, Tuggle, Chris K, Archibald, Alan L, Hume, David A
Published in The Journal of immunology (1950) (15.06.2013)
Published in The Journal of immunology (1950) (15.06.2013)
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Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs
Matika, Oswald, Robledo, Diego, Pong-Wong, Ricardo, Bishop, Stephen C, Riggio, Valentina, Finlayson, Heather, Lowe, Natalie R, Hoste, Annabelle E, Walling, Grant A, Del-Pozo, Jorge, Archibald, Alan L, Woolliams, John A, Houston, Ross D
Published in PLoS genetics (30.01.2019)
Published in PLoS genetics (30.01.2019)
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A gene expression atlas of the domestic pig
Freeman, Tom C, Ivens, Alasdair, Baillie, J Kenneth, Beraldi, Dario, Barnett, Mark W, Dorward, David, Downing, Alison, Fairbairn, Lynsey, Kapetanovic, Ronan, Raza, Sobia, Tomoiu, Andru, Alberio, Ramiro, Wu, Chunlei, Su, Andrew I, Summers, Kim M, Tuggle, Christopher K, Archibald, Alan L, Hume, David A
Published in BMC biology (15.11.2012)
Published in BMC biology (15.11.2012)
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A Gene Expression Atlas of the Domestic Water Buffalo ( Bubalus bubalis )
Young, Rachel, Lefevre, Lucas, Bush, Stephen J, Joshi, Akshay, Singh, Salam Herojeet, Jadhav, Santosh Kumar, Dhanikachalam, Velu, Lisowski, Zofia M, Iamartino, Daniela, Summers, Kim M, Williams, John L, Archibald, Alan L, Gokhale, Suresh, Kumar, Satish, Hume, David A
Published in Frontiers in genetics (24.07.2019)
Published in Frontiers in genetics (24.07.2019)
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A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig
Georges, Michel, Andersson, Leif, Van Laere, Anne-Sophie, Nguyen, Minh, Braunschweig, Martin, Nezer, Carine, Collette, Catherine, Moreau, Laurence, Archibald, Alan L, Haley, Chris S, Buys, Nadine, Tally, Michael, Andersson, Göran
Published in Nature (23.10.2003)
Published in Nature (23.10.2003)
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Global Analysis of Transcription Start Sites in the New Ovine Reference Genome ( Oar rambouillet v1.0 )
Salavati, Mazdak, Caulton, Alex, Clark, Richard, Gazova, Iveta, Smith, Timothy P L, Worley, Kim C, Cockett, Noelle E, Archibald, Alan L, Clarke, Shannon M, Murdoch, Brenda M, Clark, Emily L
Published in Frontiers in genetics (23.10.2020)
Published in Frontiers in genetics (23.10.2020)
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Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues
Xiang, Ruidong, Oddy, Victor Hutton, Archibald, Alan L, Vercoe, Phillip E, Dalrymple, Brian P
Published in PeerJ (San Francisco, CA) (08.03.2016)
Published in PeerJ (San Francisco, CA) (08.03.2016)
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Pig genome sequence--analysis and publication strategy
Archibald, Alan L, Bolund, Lars, Churcher, Carol, Fredholm, Merete, Groenen, Martien A M, Harlizius, Barbara, Lee, Kyung-Tai, Milan, Denis, Rogers, Jane, Rothschild, Max F, Uenishi, Hirohide, Wang, Jun, Schook, Lawrence B
Published in BMC genomics (19.07.2010)
Published in BMC genomics (19.07.2010)
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Functional Annotation of the Transcriptome of the Pig, Sus scrofa , Based Upon Network Analysis of an RNAseq Transcriptional Atlas
Summers, Kim M, Bush, Stephen J, Wu, Chunlei, Su, Andrew I, Muriuki, Charity, Clark, Emily L, Finlayson, Heather A, Eory, Lel, Waddell, Lindsey A, Talbot, Richard, Archibald, Alan L, Hume, David A
Published in Frontiers in genetics (14.02.2020)
Published in Frontiers in genetics (14.02.2020)
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