Prediction of drug–target interaction networks from the integration of chemical and genomic spaces
Yamanishi, Yoshihiro, Araki, Michihiro, Gutteridge, Alex, Honda, Wataru, Kanehisa, Minoru
Published in Bioinformatics (01.07.2008)
Published in Bioinformatics (01.07.2008)
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Journal Article
Mangrove crab intestine and habitat sediment microbiomes cooperatively work on carbon and nitrogen cycling
Tongununui, Prasert, Kuriya, Yuki, Murata, Masahiro, Sawada, Hideki, Araki, Michihiro, Nomura, Mika, Morioka, Katsuji, Ichie, Tomoaki, Ikejima, Kou, Adachi, Kohsuke
Published in PloS one (31.12.2021)
Published in PloS one (31.12.2021)
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Journal Article
Mechanism-based tuning of insect 3,4-dihydroxyphenylacetaldehyde synthase for synthetic bioproduction of benzylisoquinoline alkaloids
Vavricka, Christopher J, Yoshida, Takanobu, Kuriya, Yuki, Takahashi, Shunsuke, Ogawa, Teppei, Ono, Fumie, Agari, Kazuko, Kiyota, Hiromasa, Li, Jianyong, Ishii, Jun, Tsuge, Kenji, Minami, Hiromichi, Araki, Michihiro, Hasunuma, Tomohisa, Kondo, Akihiko
Published in Nature communications (01.05.2019)
Published in Nature communications (01.05.2019)
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Journal Article
Machine learning discovery of missing links that mediate alternative branches to plant alkaloids
Vavricka, Christopher J, Takahashi, Shunsuke, Watanabe, Naoki, Takenaka, Musashi, Matsuda, Mami, Yoshida, Takanobu, Suzuki, Ryo, Kiyota, Hiromasa, Li, Jianyong, Minami, Hiromichi, Ishii, Jun, Tsuge, Kenji, Araki, Michihiro, Kondo, Akihiko, Hasunuma, Tomohisa
Published in Nature communications (16.03.2022)
Published in Nature communications (16.03.2022)
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Journal Article
Predicting Cardiovascular Disease Mortality: Leveraging Machine Learning for Comprehensive Assessment of Health and Nutrition Variables
Martin-Morales, Agustin, Yamamoto, Masaki, Inoue, Mai, Vu, Thien, Dawadi, Research, Araki, Michihiro
Published in Nutrients (01.09.2023)
Published in Nutrients (01.09.2023)
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Journal Article
Extracting the latent needs of dementia patients and caregivers from transcribed interviews in japanese: an initial assessment of the availability of morpheme selection as input data with Z-scores in machine learning
Tanemura, Nanae, Sasaki, Tsuyoshi, Miyamoto, Ryotaro, Watanabe, Jin, Araki, Michihiro, Sato, Junko, Chiba, Tsuyoshi
Published in BMC medical informatics and decision making (05.10.2023)
Published in BMC medical informatics and decision making (05.10.2023)
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Journal Article
Reconstruction of metabolic pathway for isobutanol production in Escherichia coli
Noda, Shuhei, Mori, Yutaro, Oyama, Sachiko, Kondo, Akihiko, Araki, Michihiro, Shirai, Tomokazu
Published in Microbial cell factories (18.07.2019)
Published in Microbial cell factories (18.07.2019)
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Journal Article
Development of a Machine Learning Model for Classifying Cooking Recipes According to Dietary Styles
Yamaguchi, Miwa, Araki, Michihiro, Hamada, Kazuki, Nojiri, Tetsuya, Nishi, Nobuo
Published in Foods (22.02.2024)
Published in Foods (22.02.2024)
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Journal Article
A Systematic Approach to Time-series Metabolite Profiling and RNA-seq Analysis of Chinese Hamster Ovary Cell Culture
Hsu, Han-Hsiu, Araki, Michihiro, Mochizuki, Masao, Hori, Yoshimi, Murata, Masahiro, Kahar, Prihardi, Yoshida, Takanobu, Hasunuma, Tomohisa, Kondo, Akihiko
Published in Scientific reports (02.03.2017)
Published in Scientific reports (02.03.2017)
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Journal Article
Author Correction: Mechanism-based tuning of insect 3,4-dihydroxyphenylacetaldehyde synthase for synthetic bioproduction of benzylisoquinoline alkaloids
Vavricka, Christopher J, Yoshida, Takanobu, Kuriya, Yuki, Takahashi, Shunsuke, Ogawa, Teppei, Ono, Fumie, Agari, Kazuko, Kiyota, Hiromasa, Li, Jianyong, Ishii, Jun, Tsuge, Kenji, Minami, Hiromichi, Araki, Michihiro, Hasunuma, Tomohisa, Kondo, Akihiko
Published in Nature communications (22.05.2019)
Published in Nature communications (22.05.2019)
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Journal Article
Integrated pathway mining and selection of an artificial CYP79-mediated bypass to improve benzylisoquinoline alkaloid biosynthesis
Takenaka, Musashi, Kamasaka, Kouhei, Daryong, Kim, Tsuchikane, Keiko, Miyazawa, Seiha, Fujihana, Saeko, Hori, Yoshimi, Vavricka, Christopher J, Hosoyama, Akira, Kawasaki, Hiroko, Shirai, Tomokazu, Araki, Michihiro, Nakagawa, Akira, Minami, Hiromichi, Kondo, Akihiko, Hasunuma, Tomohisa
Published in Microbial cell factories (15.06.2024)
Published in Microbial cell factories (15.06.2024)
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Journal Article
Programmable Cells: Interfacing Natural and Engineered Gene Networks
Kobayashi, Hideki, Kærn, Mads, Araki, Michihiro, Chung, Kristy, Gardner, Timothy S., Cantor, Charles R., Collins, James J.
Published in Proceedings of the National Academy of Sciences - PNAS (01.06.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (01.06.2004)
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Journal Article
Different Recognition of Protein Features Depending on Deep Learning Models: A Case Study of Aromatic Decarboxylase UbiD
Watanabe, Naoki, Kuriya, Yuki, Murata, Masahiro, Yamamoto, Masaki, Shimizu, Masayuki, Araki, Michihiro
Published in Biology (Basel, Switzerland) (31.05.2023)
Published in Biology (Basel, Switzerland) (31.05.2023)
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Journal Article
Predicting Overweight and Obesity Status Among Malaysian Working Adults With Machine Learning or Logistic Regression: Retrospective Comparison Study
Wong, Jyh Eiin, Yamaguchi, Miwa, Nishi, Nobuo, Araki, Michihiro, Wee, Lei Hum
Published in JMIR formative research (07.12.2022)
Published in JMIR formative research (07.12.2022)
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Journal Article
Machine Learning Approaches for Stroke Risk Prediction: Findings from the Suita Study
Vu, Thien, Kokubo, Yoshihiro, Inoue, Mai, Yamamoto, Masaki, Mohsen, Attayeb, Martin-Morales, Agustin, Inoué, Takao, Dawadi, Research, Araki, Michihiro
Published in Journal of cardiovascular development and disease (01.07.2024)
Published in Journal of cardiovascular development and disease (01.07.2024)
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Journal Article
History-Driven Genetic Modification Design Technique Using a Domain-Specific Lexical Model for the Acceleration of DBTL Cycles for Microbial Cell Factories
Nakazawa, Shiori, Imaichi, Osamu, Kogure, Takahisa, Kubota, Takeshi, Toyoda, Koichi, Suda, Masako, Inui, Masayuki, Ito, Kiyoto, Shirai, Tomokazu, Araki, Michihiro
Published in ACS synthetic biology (17.09.2021)
Published in ACS synthetic biology (17.09.2021)
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Journal Article
Synthesis of Sulfo-Sialic Acid Analogues: Potent Neuraminidase Inhibitors in Regards to Anomeric Functionality
Vavricka, Christopher J, Muto, Chiaki, Hasunuma, Tomohisa, Kimura, Yoshinobu, Araki, Michihiro, Wu, Yan, Gao, George F, Ohrui, Hiroshi, Izumi, Minoru, Kiyota, Hiromasa
Published in Scientific reports (15.08.2017)
Published in Scientific reports (15.08.2017)
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Journal Article
M-path: a compass for navigating potential metabolic pathways
Araki, Michihiro, Cox, 3rd, Robert Sidney, Makiguchi, Hiroki, Ogawa, Teppei, Taniguchi, Takeshi, Miyaoku, Kohei, Nakatsui, Masahiko, Hara, Kiyotaka Y, Kondo, Akihiko
Published in Bioinformatics (15.03.2015)
Published in Bioinformatics (15.03.2015)
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