Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data
Tjärnberg, Andreas, Mahmood, Omar, Jackson, Christopher A, Saldi, Giuseppe-Antonio, Cho, Kyunghyun, Christiaen, Lionel A, Bonneau, Richard A
Published in PLoS computational biology (07.01.2021)
Published in PLoS computational biology (07.01.2021)
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MultiVI: deep generative model for the integration of multimodal data
Ashuach, Tal, Gabitto, Mariano I., Koodli, Rohan V., Saldi, Giuseppe-Antonio, Jordan, Michael I., Yosef, Nir
Published in Nature methods (01.08.2023)
Published in Nature methods (01.08.2023)
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Cortical somatostatin interneuron subtypes form cell-type-specific circuits
Wu, Sherry Jingjing, Sevier, Elaine, Dwivedi, Deepanjali, Saldi, Giuseppe-Antonio, Hairston, Ariel, Yu, Sabrina, Abbott, Lydia, Choi, Da Hae, Sherer, Mia, Qiu, Yanjie, Shinde, Ashwini, Lenahan, Mackenzie, Rizzo, Daniella, Xu, Qing, Barrera, Irving, Kumar, Vipin, Marrero, Giovanni, Prönneke, Alvar, Huang, Shuhan, Kullander, Klas, Stafford, David A., Macosko, Evan, Chen, Fei, Rudy, Bernardo, Fishell, Gord
Published in Neuron (Cambridge, Mass.) (06.09.2023)
Published in Neuron (Cambridge, Mass.) (06.09.2023)
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High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0
Skok Gibbs, Claudia, Jackson, Christopher A, Saldi, Giuseppe-Antonio, Tjärnberg, Andreas, Shah, Aashna, Watters, Aaron, De Veaux, Nicholas, Tchourine, Konstantine, Yi, Ren, Hamamsy, Tymor, Castro, Dayanne M, Carriero, Nicholas, Gorissen, Bram L, Gresham, David, Miraldi, Emily R, Bonneau, Richard
Published in Bioinformatics (Oxford, England) (28.04.2022)
Published in Bioinformatics (Oxford, England) (28.04.2022)
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Nighttime-specific differential gene expression in suprachiasmatic nucleus and habenula is associated with resilience to chronic social stress
Narain, Priyam, Petković, Aleksa, Šušić, Marko, Haniffa, Salma, Anwar, Mariam, Arnoux, Marc, Drou, Nizar, Antonio-Saldi, Giuseppe, Chaudhury, Dipesh
Published in Translational psychiatry (02.10.2024)
Published in Translational psychiatry (02.10.2024)
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A viral strategy for targeting and manipulating interneurons across vertebrate species
Dimidschstein, Jordane, Chen, Qian, Tremblay, Robin, Rogers, Stephanie L, Saldi, Giuseppe-Antonio, Guo, Lihua, Xu, Qing, Liu, Runpeng, Lu, Congyi, Chu, Jianhua, Grimley, Joshua S, Krostag, Anne-Rachel, Kaykas, Ajamete, Avery, Michael C, Rashid, Mohammad S, Baek, Myungin, Jacob, Amanda L, Smith, Gordon B, Wilson, Daniel E, Kosche, Georg, Kruglikov, Illya, Rusielewicz, Tomasz, Kotak, Vibhakar C, Mowery, Todd M, Anderson, Stewart A, Callaway, Edward M, Dasen, Jeremy S, Fitzpatrick, David, Fossati, Valentina, Long, Michael A, Noggle, Scott, Reynolds, John H, Sanes, Dan H, Rudy, Bernardo, Feng, Guoping, Fishell, Gord
Published in Nature neuroscience (01.12.2016)
Published in Nature neuroscience (01.12.2016)
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Erratum: Corrigendum: A viral strategy for targeting and manipulating interneurons across vertebrate species
Dimidschstein, Jordane, Chen, Qian, Tremblay, Robin, Rogers, Stephanie L, Saldi, Giuseppe-Antonio, Guo, Lihua, Xu, Qing, Liu, Runpeng, Lu, Congyi, Chu, Jianhua, Avery, Michael C, Rashid, Mohammad S, Baek, Myungin, Jacob, Amanda L, Smith, Gordon B, Wilson, Daniel E, Kosche, Georg, Kruglikov, Illya, Rusielewicz, Tomasz, Kotak, Vibhakar C, Mowery, Todd M, Anderson, Stewart A, Callaway, Edward M, Dasen, Jeremy S, Fitzpatrick, David, Fossati, Valentina, Long, Michael A, Noggle, Scott, Reynolds, John H, Sanes, Dan H, Rudy, Bernardo, Feng, Guoping, Fishell, Gord
Published in Nature neuroscience (01.07.2017)
Published in Nature neuroscience (01.07.2017)
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Correction: Corrigendum: A viral strategy for targeting and manipulating interneurons across vertebrate species
Dimidschstein, Jordane, Chen, Qian, Tremblay, Robin, Rogers, Stephanie L, Saldi, Giuseppe-Antonio, Guo, Lihua, Xu, Qing, Liu, Runpeng, Lu, Congyi, Chu, Jianhua, Avery, Michael C, Rashid, Mohammad S, Baek, Myungin, Jacob, Amanda L, Smith, Gordon B, Wilson, Daniel E, Kosche, Georg, Kruglikov, Illya, Rusielewicz, Tomasz, Kotak, Vibhakar C, Mowery, Todd M, Anderson, Stewart A, Callaway, Edward M, Dasen, Jeremy S, Fitzpatrick, David, Fossati, Valentina, Long, Michael A, Noggle, Scott, Reynolds, John H, Sanes, Dan H, Rudy, Bernardo, Feng, Guoping, Fishell, Gord
Published in Nature neuroscience (01.07.2017)
Published in Nature neuroscience (01.07.2017)
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Addendum: A viral strategy for targeting and manipulating interneurons across vertebrate species
Dimidschstein, Jordane, Chen, Qian, Tremblay, Robin, Rogers, Stephanie L, Saldi, Giuseppe-Antonio, Guo, Lihua, Xu, Qing, Liu, Runpeng, Lu, Congyi, Chu, Jianhua, Avery, Michael C, Rashid, Mohammad S, Baek, Myungin, Jacob, Amanda L, Smith, Gordon B, Wilson, Daniel E, Kosche, Georg, Kruglikov, Illya, Rusielewicz, Tomasz, Kotak, Vibhakar C, Mowery, Todd M, Anderson, Stewart A, Callaway, Edward M, Dasen, Jeremy S, Fitzpatrick, David, Fossati, Valentina, Long, Michael A, Noggle, Scott, Reynolds, John H, Sanes, Dan H, Rudy, Bernardo, Feng, Guoping, Fishell, Gord
Published in Nature neuroscience (01.07.2017)
Published in Nature neuroscience (01.07.2017)
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Journal Article
Corrigendum: A viral strategy for targeting and manipulating interneurons across vertebrate species
Dimidschstein, Jordane, Chen, Qian, Tremblay, Robin, Rogers, Stephanie L, Saldi, Giuseppe-Antonio, Guo, Lihua, Xu, Qing, Liu, Runpeng, Lu, Congyi, Chu, Jianhua, Avery, Michael C, Rashid, Mohammad S, Baek, Myungin, Jacob, Amanda L, Smith, Gordon B, Wilson, Daniel E, Kosche, Georg, Kruglikov, Illya, Rusielewicz, Tomasz, Kotak, Vibhakar C, Mowery, Todd M, Anderson, Stewart A, Callaway, Edward M, Dasen, Jeremy S, Fitzpatrick, David, Fossati, Valentina, Long, Michael A, Noggle, Scott, Reynolds, John H, Sanes, Dan H, Rudy, Bernardo, Feng, Guoping, Fishell, Gord
Published in Nature neuroscience (01.07.2017)
Published in Nature neuroscience (01.07.2017)
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