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SARS-CoV-2 within-host diversity and transmission
Lythgoe, Katrina A., Hall, Matthew, Ferretti, Luca, de Cesare, Mariateresa, MacIntyre-Cockett, George, Trebes, Amy, Andersson, Monique, Otecko, Newton, Wise, Emma L., Moore, Nathan, Lynch, Jessica, Kidd, Stephen, Cortes, Nicholas, Mori, Matilde, Williams, Rebecca, Vernet, Gabrielle, Justice, Anita, Green, Angie, Nicholls, Samuel M., Ansari, M. Azim, Abeler-Dörner, Lucie, Moore, Catrin E., Peto, Timothy E. A., Eyre, David W., Shaw, Robert, Simmonds, Peter, Buck, David, Todd, John A., Connor, Thomas R., Ashraf, Shirin, da Silva Filipe, Ana, Shepherd, James, Thomson, Emma C., Bonsall, David, Fraser, Christophe, Golubchik, Tanya
Published in Science (American Association for the Advancement of Science) (16.04.2021)
Published in Science (American Association for the Advancement of Science) (16.04.2021)
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Testing for dependence on tree structures
Behr, Merle, Ansari, M. Azim, Munk, Axel, Holmes, Chris
Published in Proceedings of the National Academy of Sciences - PNAS (05.05.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (05.05.2020)
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Resistance analysis of genotype 3 hepatitis C virus indicates subtypes inherently resistant to nonstructural protein 5A inhibitors
Smith, David, Magri, Andrea, Bonsall, David, Ip, Camilla L.C., Trebes, Amy, Brown, Anthony, Piazza, Palo, Bowden, Rory, Nguyen, Dung, Ansari, M. Azim, Simmonds, Peter, Barnes, Eleanor
Published in Hepatology (Baltimore, Md.) (01.05.2019)
Published in Hepatology (Baltimore, Md.) (01.05.2019)
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Defining the key intrahepatic gene networks in HCV infection driven by sex
Marchi, Emanuele, Ramamurthy, Narayan, Ansari, M Azim, Harrer, Caroline E, Barnes, Eleanor, Klenerman, Paul
Published in Gut (01.05.2023)
Published in Gut (01.05.2023)
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Genetically distinct within-host subpopulations of hepatitis C virus persist after Direct-Acting Antiviral treatment failure
Zhao, Lele, Hall, Matthew, Giridhar, Prahalad, Ghafari, Mahan, Kemp, Steven, Chai, Haiting, Klenerman, Paul, Barnes, Eleanor, Ansari, M. Azim, Lythgoe, Katrina
Published in PLoS pathogens (01.04.2025)
Published in PLoS pathogens (01.04.2025)
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Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)
McNaughton, Anna L., Roberts, Hannah E., Bonsall, David, de Cesare, Mariateresa, Mokaya, Jolynne, Lumley, Sheila F., Golubchik, Tanya, Piazza, Paolo, Martin, Jacqueline B., de Lara, Catherine, Brown, Anthony, Ansari, M. Azim, Bowden, Rory, Barnes, Eleanor, Matthews, Philippa C.
Published in Scientific reports (08.05.2019)
Published in Scientific reports (08.05.2019)
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A Comprehensive Genomics Solution for HIV Surveillance and Clinical Monitoring in Low-Income Settings
Bonsall, David, Golubchik, Tanya, de Cesare, Mariateresa, Limbada, Mohammed, Kosloff, Barry, MacIntyre-Cockett, George, Hall, Matthew, Wymant, Chris, Ansari, M. Azim, Abeler-Dörner, Lucie, Schaap, Ab, Brown, Anthony, Barnes, Eleanor, Piwowar-Manning, Estelle, Eshleman, Susan, Wilson, Ethan, Emel, Lynda, Hayes, Richard, Fidler, Sarah, Ayles, Helen, Bowden, Rory, Fraser, Christophe
Published in Journal of clinical microbiology (22.09.2020)
Published in Journal of clinical microbiology (22.09.2020)
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Efficient Inference of Recombination Hot Regions in Bacterial Genomes
Yahara, Koji, Didelot, Xavier, Ansari, M. Azim, Sheppard, Samuel K., Falush, Daniel
Published in Molecular biology and evolution (01.06.2014)
Published in Molecular biology and evolution (01.06.2014)
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Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data
Mayne, Richard, Secret, Shannah, Geoghegan, Cyndi, Trebes, Amy, Kean, Kai, Reid, Kaitlin, Lin, Gu-Lung, Ansari, M Azim, de Cesare, Mariateresa, Bonsall, David, Elliott, Ivo, Piazza, Paolo, Brown, Anthony, Bray, James, Knight, Julian C, Harvala, Heli, Breuer, Judith, Simmonds, Peter, Bowden, Rory J, Golubchik, Tanya
Published in Bioinformatics (Oxford, England) (01.10.2024)
Published in Bioinformatics (Oxford, England) (01.10.2024)
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Inference of Host–Pathogen Interaction Matrices from Genome-Wide Polymorphism Data
Märkle, Hanna, John, Sona, Metzger, Lukas, Ansari, M Azim, Pedergnana, Vincent, Tellier, Aurélien
Published in Molecular biology and evolution (04.09.2024)
Published in Molecular biology and evolution (04.09.2024)
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Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes
Thomson, Emma, Ip, Camilla L. C., Badhan, Anjna, Christiansen, Mette T., Adamson, Walt, Ansari, M. Azim, Bibby, David, Breuer, Judith, Brown, Anthony, Bowden, Rory, Bryant, Josie, Bonsall, David, Da Silva Filipe, Ana, Hinds, Chris, Hudson, Emma, Klenerman, Paul, Lythgow, Kieren, Mbisa, Jean L., McLauchlan, John, Myers, Richard, Piazza, Paolo, Roy, Sunando, Trebes, Amy, Sreenu, Vattipally B., Witteveldt, Jeroen, Barnes, Eleanor, Simmonds, Peter
Published in Journal of clinical microbiology (01.10.2016)
Published in Journal of clinical microbiology (01.10.2016)
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Changes in the prevalence of hepatitis B and C viral infections in Sindh province, Pakistan: Findings from two sero‐surveys in 2007 and 2019
Alamneh, Tesfa Sewunet, Walker, Josephine G., Lim, Aaron G., Alam, Ejaz, Hamid, Saeed, Foster, Graham R., Choudhry, Naheed, Ansari, M. Azim, Qureshi, Huma, Vickerman, Peter
Published in Journal of viral hepatitis (01.11.2024)
Published in Journal of viral hepatitis (01.11.2024)
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Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus
Lin, Gu-Lung, Drysdale, Simon B., Snape, Matthew D., O’Connor, Daniel, Brown, Anthony, MacIntyre-Cockett, George, Mellado-Gomez, Esther, de Cesare, Mariateresa, Ansari, M. Azim, Bonsall, David, Bray, James E., Jolley, Keith A., Bowden, Rory, Aerssens, Jeroen, Bont, Louis, Openshaw, Peter J. M., Martinon-Torres, Federico, Nair, Harish, Golubchik, Tanya, Pollard, Andrew J.
Published in Nature communications (16.03.2024)
Published in Nature communications (16.03.2024)
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Impact of Interferon Lambda 4 Genotype on Interferon‐Stimulated Gene Expression During Direct‐Acting Antiviral Therapy for Hepatitis C
Ramamurthy, Narayan, Marchi, Emanuele, Ansari, M. Azim, Pedergnana, Vincent, Mclean, Angela, Hudson, Emma, Bowden, Rory, Spencer, Chris C.A., Barnes, Eleanor, Klenerman, Paul
Published in Hepatology (Baltimore, Md.) (01.09.2018)
Published in Hepatology (Baltimore, Md.) (01.09.2018)
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