ilastik: interactive machine learning for (bio)image analysis
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Published in Nature methods (01.12.2019)
Published in Nature methods (01.12.2019)
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Deep learning-enhanced light-field imaging with continuous validation
Wagner, Nils, Beuttenmueller, Fynn, Norlin, Nils, Gierten, Jakob, Boffi, Juan Carlos, Wittbrodt, Joachim, Weigert, Martin, Hufnagel, Lars, Prevedel, Robert, Kreshuk, Anna
Published in Nature methods (01.05.2021)
Published in Nature methods (01.05.2021)
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Deep learning enables fast and dense single-molecule localization with high accuracy
Speiser, Artur, Müller, Lucas-Raphael, Hoess, Philipp, Matti, Ulf, Obara, Christopher J, Legant, Wesley R, Kreshuk, Anna, Macke, Jakob H, Ries, Jonas, Turaga, Srinivas C
Published in Nature methods (01.09.2021)
Published in Nature methods (01.09.2021)
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Accurate and versatile 3D segmentation of plant tissues at cellular resolution
Wolny, Adrian, Cerrone, Lorenzo, Vijayan, Athul, Tofanelli, Rachele, Barro, Amaya Vilches, Louveaux, Marion, Wenzl, Christian, Strauss, Sören, Wilson-Sánchez, David, Lymbouridou, Rena, Steigleder, Susanne S, Pape, Constantin, Bailoni, Alberto, Duran-Nebreda, Salva, Bassel, George W, Lohmann, Jan U, Tsiantis, Miltos, Hamprecht, Fred A, Schneitz, Kay, Maizel, Alexis, Kreshuk, Anna
Published in eLife (29.07.2020)
Published in eLife (29.07.2020)
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A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule
Vijayan, Athul, Tofanelli, Rachele, Strauss, Sören, Cerrone, Lorenzo, Wolny, Adrian, Strohmeier, Joanna, Kreshuk, Anna, Hamprecht, Fred A, Smith, Richard S, Schneitz, Kay
Published in eLife (06.01.2021)
Published in eLife (06.01.2021)
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DOME: recommendations for supervised machine learning validation in biology
Walsh, Ian, Fishman, Dmytro, Garcia-Gasulla, Dario, Titma, Tiina, Pollastri, Gianluca, Harrow, Jennifer, Psomopoulos, Fotis E, Tosatto, Silvio C E
Published in Nature methods (01.10.2021)
Published in Nature methods (01.10.2021)
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Multicut brings automated neurite segmentation closer to human performance
Beier, Thorsten, Pape, Constantin, Rahaman, Nasim, Prange, Timo, Berg, Stuart, Bock, Davi D, Cardona, Albert, Knott, Graham W, Plaza, Stephen M, Scheffer, Louis K, Koethe, Ullrich, Kreshuk, Anna, Hamprecht, Fred A
Published in Nature methods (01.02.2017)
Published in Nature methods (01.02.2017)
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Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
Calì, Corrado, Baghabra, Jumana, Boges, Daniya J., Holst, Glendon R., Kreshuk, Anna, Hamprecht, Fred A., Srinivasan, Madhusudhanan, Lehväslaiho, Heikki, Magistretti, Pierre J.
Published in Journal of comparative neurology (1911) (01.01.2016)
Published in Journal of comparative neurology (1911) (01.01.2016)
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MorphoFeatures for unsupervised exploration of cell types, tissues, and organs in volume electron microscopy
Zinchenko, Valentyna, Hugger, Johannes, Uhlmann, Virginie, Arendt, Detlev, Kreshuk, Anna
Published in eLife (16.02.2023)
Published in eLife (16.02.2023)
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Semiautomated correlative 3D electron microscopy of in vivo-imaged axons and dendrites
Maco, Bohumil, Cantoni, Marco, Holtmaat, Anthony, Kreshuk, Anna, Hamprecht, Fred A, Knott, Graham W
Published in Nature protocols (01.06.2014)
Published in Nature protocols (01.06.2014)
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Integration of Cell Growth and Asymmetric Division during Lateral Root Initiation in Arabidopsis thaliana
Schütz, Lilli Marie, Louveaux, Marion, Vilches Barro, Amaya, Bouziri, Sami, Cerrone, Lorenzo, Wolny, Adrian, Kreshuk, Anna, Hamprecht, Fred A, Maizel, Alexis
Published in Plant and cell physiology (10.11.2021)
Published in Plant and cell physiology (10.11.2021)
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Sensing their plasma membrane curvature allows migrating cells to circumvent obstacles
Sitarska, Ewa, Almeida, Silvia Dias, Beckwith, Marianne Sandvold, Stopp, Julian, Czuchnowski, Jakub, Siggel, Marc, Roessner, Rita, Tschanz, Aline, Ejsing, Christer, Schwab, Yannick, Kosinski, Jan, Sixt, Michael, Kreshuk, Anna, Erzberger, Anna, Diz-Muñoz, Alba
Published in Nature communications (13.09.2023)
Published in Nature communications (13.09.2023)
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Deep intravital brain tumor imaging enabled by tailored three-photon microscopy and analysis
Schubert, Marc Cicero, Soyka, Stella Judith, Tamimi, Amr, Maus, Emanuel, Schroers, Julian, Wißmann, Niklas, Reyhan, Ekin, Tetzlaff, Svenja Kristin, Yang, Yvonne, Denninger, Robert, Peretzke, Robin, Beretta, Carlo, Drumm, Michael, Heuer, Alina, Buchert, Verena, Steffens, Alicia, Walshon, Jordain, McCortney, Kathleen, Heiland, Sabine, Bendszus, Martin, Neher, Peter, Golebiewska, Anna, Wick, Wolfgang, Winkler, Frank, Breckwoldt, Michael O, Kreshuk, Anna, Kuner, Thomas, Horbinski, Craig, Kurz, Felix Tobias, Prevedel, Robert, Venkataramani, Varun
Published in Nature communications (10.09.2024)
Published in Nature communications (10.09.2024)
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Multiplex Microscopy Assay for Assessment of Therapeutic and Serum Antibodies against Emerging Pathogens
Sartingen, Nuno, Stürmer, Vanessa, Kaltenböck, Matthias, Müller, Thorsten G, Schnitzler, Paul, Kreshuk, Anna, Kräusslich, Hans-Georg, Merle, Uta, Mücksch, Frauke, Müller, Barbara, Pape, Constantin, Laketa, Vibor
Published in Viruses (17.09.2024)
Published in Viruses (17.09.2024)
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Automated detection of synapses in serial section transmission electron microscopy image stacks
Kreshuk, Anna, Koethe, Ullrich, Pax, Elizabeth, Bock, Davi D, Hamprecht, Fred A
Published in PloS one (06.02.2014)
Published in PloS one (06.02.2014)
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QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain
Yates, Sharon C, Groeneboom, Nicolaas E, Coello, Christopher, Lichtenthaler, Stefan F, Kuhn, Peer-Hendrik, Demuth, Hans-Ulrich, Hartlage-Rübsamen, Maike, Roßner, Steffen, Leergaard, Trygve, Kreshuk, Anna, Puchades, Maja A, Bjaalie, Jan G
Published in Frontiers in neuroinformatics (03.12.2019)
Published in Frontiers in neuroinformatics (03.12.2019)
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