Clonality inference in multiple tumor samples using phylogeny
Malikic, Salem, McPherson, Andrew W, Donmez, Nilgun, Sahinalp, Cenk S
Published in Bioinformatics (01.05.2015)
Published in Bioinformatics (01.05.2015)
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Perspectives of people experiencing homelessness with recent non-fatal street drug overdose on the Pharmacist and Homeless Outreach Engagement and Non-medical Independent prescribing Rx (PHOENIx) intervention
Farmer, Natalia, McPherson, Andrew, Thomson, Jim, Lowrie, Richard
Published in PloS one (13.05.2024)
Published in PloS one (13.05.2024)
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Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling
Zhang, Allen W., O’Flanagan, Ciara, Chavez, Elizabeth A., Lim, Jamie L. P., Ceglia, Nicholas, McPherson, Andrew, Wiens, Matt, Walters, Pascale, Chan, Tim, Hewitson, Brittany, Lai, Daniel, Mottok, Anja, Sarkozy, Clementine, Chong, Lauren, Aoki, Tomohiro, Wang, Xuehai, Weng, Andrew P, McAlpine, Jessica N., Aparicio, Samuel, Steidl, Christian, Campbell, Kieran R., Shah, Sohrab P.
Published in Nature methods (01.10.2019)
Published in Nature methods (01.10.2019)
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Genomic rearrangements involving programmed death ligands are recurrent in primary mediastinal large B-cell lymphoma
Twa, David D.W., Chan, Fong Chun, Ben-Neriah, Susana, Woolcock, Bruce W., Mottok, Anja, Tan, King L., Slack, Graham W., Gunawardana, Jay, Lim, Raymond S., McPherson, Andrew W., Kridel, Robert, Telenius, Adele, Scott, David W., Savage, Kerry J., Shah, Sohrab P., Gascoyne, Randy D., Steidl, Christian
Published in Blood (27.03.2014)
Published in Blood (27.03.2014)
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Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses
O'Flanagan, Ciara H, Campbell, Kieran R, Zhang, Allen W, Kabeer, Farhia, Lim, Jamie L P, Biele, Justina, Eirew, Peter, Lai, Daniel, McPherson, Andrew, Kong, Esther, Bates, Cherie, Borkowski, Kelly, Wiens, Matt, Hewitson, Brittany, Hopkins, James, Pham, Jenifer, Ceglia, Nicholas, Moore, Richard, Mungall, Andrew J, McAlpine, Jessica N, Shah, Sohrab P, Aparicio, Samuel
Published in Genome Biology (17.10.2019)
Published in Genome Biology (17.10.2019)
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Synthesis of 5'-GalNAc-Conjugated Oligonucleotides: A Comparison of Solid and Solution-Phase Conjugation Strategies
Cedillo, Isaiah, Chreng, Dana, Engle, Elyse, Chen, Lijian, McPherson, Andrew K, Rodriguez, Andrew A
Published in Molecules (Basel, Switzerland) (15.08.2017)
Published in Molecules (Basel, Switzerland) (15.08.2017)
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Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer
McPherson, Andrew, Roth, Andrew, Laks, Emma, Masud, Tehmina, Bashashati, Ali, Zhang, Allen W, Ha, Gavin, Biele, Justina, Yap, Damian, Wan, Adrian, Prentice, Leah M, Khattra, Jaswinder, Smith, Maia A, Nielsen, Cydney B, Mullaly, Sarah C, Kalloger, Steve, Karnezis, Anthony, Shumansky, Karey, Siu, Celia, Rosner, Jamie, Chan, Hector Li, Ho, Julie, Melnyk, Nataliya, Senz, Janine, Yang, Winnie, Moore, Richard, Mungall, Andrew J, Marra, Marco A, Bouchard-Côté, Alexandre, Gilks, C Blake, Huntsman, David G, McAlpine, Jessica N, Aparicio, Samuel, Shah, Sohrab P
Published in Nature genetics (01.07.2016)
Published in Nature genetics (01.07.2016)
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Journal Article
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells
Shi, Hongyu, Williams, Marc J., Satas, Gryte, Weiner, Adam C., McPherson, Andrew, Shah, Sohrab P.
Published in Nature communications (20.03.2024)
Published in Nature communications (20.03.2024)
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clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers
Campbell, Kieran R, Steif, Adi, Laks, Emma, Zahn, Hans, Lai, Daniel, McPherson, Andrew, Farahani, Hossein, Kabeer, Farhia, O'Flanagan, Ciara, Biele, Justina, Brimhall, Jazmine, Wang, Beixi, Walters, Pascale, Bouchard-Côté, Alexandre, Aparicio, Samuel, Shah, Sohrab P
Published in Genome Biology (12.03.2019)
Published in Genome Biology (12.03.2019)
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Journal Article
Clonal genotype and population structure inference from single-cell tumor sequencing
Roth, Andrew, McPherson, Andrew, Laks, Emma, Biele, Justina, Yap, Damian, Wan, Adrian, Smith, Maia A, Nielsen, Cydney B, McAlpine, Jessica N, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P
Published in Nature methods (01.07.2016)
Published in Nature methods (01.07.2016)
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ARID1A Mutations in Endometriosis-Associated Ovarian Carcinomas
Wiegand, Kimberly C, Shah, Sohrab P, Al-Agha, Osama M, Zhao, Yongjun, Tse, Kane, Zeng, Thomas, Senz, Janine, McConechy, Melissa K, Anglesio, Michael S, Kalloger, Steve E, Yang, Winnie, Heravi-Moussavi, Alireza, Giuliany, Ryan, Chow, Christine, Fee, John, Zayed, Abdalnasser, Prentice, Leah, Melnyk, Nataliya, Turashvili, Gulisa, Delaney, Allen D, Madore, Jason, Yip, Stephen, McPherson, Andrew W, Ha, Gavin, Bell, Lynda, Fereday, Sian, Tam, Angela, Galletta, Laura, Tonin, Patricia N, Provencher, Diane, Miller, Dianne, Jones, Steven J.M, Moore, Richard A, Morin, Gregg B, Oloumi, Arusha, Boyd, Niki, Aparicio, Samuel A, Shih, Ie-Ming, Mes-Masson, Anne-Marie, Bowtell, David D, Hirst, Martin, Gilks, Blake, Marra, Marco A, Huntsman, David G
Published in The New England journal of medicine (14.10.2010)
Published in The New England journal of medicine (14.10.2010)
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Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study
Kridel, Robert, Chan, Fong Chun, Mottok, Anja, Boyle, Merrill, Farinha, Pedro, Tan, King, Meissner, Barbara, Bashashati, Ali, McPherson, Andrew, Roth, Andrew, Shumansky, Karey, Yap, Damian, Ben-Neriah, Susana, Rosner, Jamie, Smith, Maia A, Nielsen, Cydney, Giné, Eva, Telenius, Adele, Ennishi, Daisuke, Mungall, Andrew, Moore, Richard, Morin, Ryan D, Johnson, Nathalie A, Sehn, Laurie H, Tousseyn, Thomas, Dogan, Ahmet, Connors, Joseph M, Scott, David W, Steidl, Christian, Marra, Marco A, Gascoyne, Randy D, Shah, Sohrab P
Published in PLoS medicine (13.12.2016)
Published in PLoS medicine (13.12.2016)
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Detection and Serogrouping of Dichelobacter nodosus Infection by Use of Direct PCR from Lesion Swabs To Support Outbreak-Specific Vaccination for Virulent Footrot in Sheep
McPherson, Andrew S, Dhungyel, Om P, Whittington, Richard J
Published in Journal of clinical microbiology (01.04.2018)
Published in Journal of clinical microbiology (01.04.2018)
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Inferring replication timing and proliferation dynamics from single-cell DNA sequencing data
Weiner, Adam C., Williams, Marc J., Shi, Hongyu, Vázquez-García, Ignacio, Salehi, Sohrab, Rusk, Nicole, Aparicio, Samuel, Shah, Sohrab P., McPherson, Andrew
Published in Nature communications (01.10.2024)
Published in Nature communications (01.10.2024)
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A Wearable Testbed for Studying Variable Transmission in Body-Powered Prosthetic Gripping
McPherson, Andrew I.W., Abbott, Michael E., White, Weston, Gloumakov, Yuri, Stuart, Hannah S.
Published in 2023 International Conference on Rehabilitation Robotics (ICORR) (01.01.2023)
Published in 2023 International Conference on Rehabilitation Robotics (ICORR) (01.01.2023)
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Conference Proceeding
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MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers
Steidl, Christian, Shah, Sohrab P., Woolcock, Bruce W., Rui, Lixin, Kawahara, Masahiro, Farinha, Pedro, Johnson, Nathalie A., Zhao, Yongjun, Telenius, Adele, Neriah, Susana Ben, McPherson, Andrew, Meissner, Barbara, Okoye, Ujunwa C., Diepstra, Arjan, van den Berg, Anke, Sun, Mark, Leung, Gillian, Jones, Steven J., Connors, Joseph M., Huntsman, David G., Savage, Kerry J., Rimsza, Lisa M., Horsman, Douglas E., Staudt, Louis M., Steidl, Ulrich, Marra, Marco A., Gascoyne, Randy D.
Published in Nature (London) (17.03.2011)
Published in Nature (London) (17.03.2011)
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