Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
Villani, Alexandra-Chloé, Satija, Rahul, Reynolds, Gary, Sarkizova, Siranush, Shekhar, Karthik, Fletcher, James, Griesbeck, Morgane, Butler, Andrew, Zheng, Shiwei, Lazo, Suzan, Jardine, Laura, Dixon, David, Stephenson, Emily, Nilsson, Emil, Grundberg, Ida, McDonald, David, Filby, Andrew, Li, Weibo, De Jager, Philip L., Rozenblatt-Rosen, Orit, Lane, Andrew A., Haniffa, Muzlifah, Regev, Aviv, Hacohen, Nir
Published in Science (American Association for the Advancement of Science) (21.04.2017)
Published in Science (American Association for the Advancement of Science) (21.04.2017)
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Journal Article
Single-cell reconstruction of the early maternal-fetal interface in humans
Vento-Tormo, Roser, Efremova, Mirjana, Botting, Rachel A, Turco, Margherita Y, Vento-Tormo, Miquel, Meyer, Kerstin B, Park, Jong-Eun, Stephenson, Emily, Polański, Krzysztof, Goncalves, Angela, Gardner, Lucy, Holmqvist, Staffan, Henriksson, Johan, Zou, Angela, Sharkey, Andrew M, Millar, Ben, Innes, Barbara, Wood, Laura, Wilbrey-Clark, Anna, Payne, Rebecca P, Ivarsson, Martin A, Lisgo, Steve, Filby, Andrew, Rowitch, David H, Bulmer, Judith N, Wright, Gavin J, Stubbington, Michael J T, Haniffa, Muzlifah, Moffett, Ashley, Teichmann, Sarah A
Published in Nature (London) (01.11.2018)
Published in Nature (London) (01.11.2018)
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Journal Article
Reconstructing cell cycle and disease progression using deep learning
Eulenberg, Philipp, Köhler, Niklas, Blasi, Thomas, Filby, Andrew, Carpenter, Anne E, Rees, Paul, Theis, Fabian J, Wolf, F Alexander
Published in Nature communications (06.09.2017)
Published in Nature communications (06.09.2017)
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Journal Article
Label-free cell cycle analysis for high-throughput imaging flow cytometry
Blasi, Thomas, Hennig, Holger, Summers, Huw D, Theis, Fabian J, Cerveira, Joana, Patterson, James O, Davies, Derek, Filby, Andrew, Carpenter, Anne E, Rees, Paul
Published in Nature communications (07.01.2016)
Published in Nature communications (07.01.2016)
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Journal Article
Differential IRF8 Transcription Factor Requirement Defines Two Pathways of Dendritic Cell Development in Humans
Cytlak, Urszula, Resteu, Anastasia, Pagan, Sarah, Green, Kile, Milne, Paul, Maisuria, Sheetal, McDonald, David, Hulme, Gillian, Filby, Andrew, Carpenter, Benjamin, Queen, Rachel, Hambleton, Sophie, Hague, Rosie, Lango Allen, Hana, Thaventhiran, James E.D., Doody, Gina, Collin, Matthew, Bigley, Venetia
Published in Immunity (Cambridge, Mass.) (18.08.2020)
Published in Immunity (Cambridge, Mass.) (18.08.2020)
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Journal Article
Classification of Human White Blood Cells Using Machine Learning for Stain‐Free Imaging Flow Cytometry
Lippeveld, Maxim, Knill, Carly, Ladlow, Emma, Fuller, Andrew, Michaelis, Louise J, Saeys, Yvan, Filby, Andrew, Peralta, Daniel
Published in Cytometry. Part A (01.03.2020)
Published in Cytometry. Part A (01.03.2020)
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Journal Article
Genetic Tracing via DNGR-1 Expression History Defines Dendritic Cells as a Hematopoietic Lineage
Schraml, Barbara U., van Blijswijk, Janneke, Zelenay, Santiago, Whitney, Paul G., Filby, Andrew, Acton, Sophie E., Rogers, Neil C., Moncaut, Natalia, Carvajal, Jaime J., Reis e Sousa, Caetano
Published in Cell (15.08.2013)
Published in Cell (15.08.2013)
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Journal Article
Label‐Free Identification of White Blood Cells Using Machine Learning
Nassar, Mariam, Doan, Minh, Filby, Andrew, Wolkenhauer, Olaf, Fogg, Darin K., Piasecka, Justyna, Thornton, Catherine A., Carpenter, Anne E., Summers, Huw D., Rees, Paul, Hennig, Holger
Published in Cytometry. Part A (01.08.2019)
Published in Cytometry. Part A (01.08.2019)
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Journal Article
Downregulation of MALAT1 is a hallmark of tissue and peripheral proliferative T cells in COVID-19
Dey, Shoumit, Ashwin, Helen, Milross, Luke, Hunter, Bethany, Majo, Joaquim, Filby, Andrew J, Fisher, Andrew J, Kaye, Paul M, Lagos, Dimitris
Published in Clinical and experimental immunology (05.06.2023)
Published in Clinical and experimental immunology (05.06.2023)
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Journal Article
Lipopolysaccharide inhalation recruits monocytes and dendritic cell subsets to the alveolar airspace
Jardine, Laura, Wiscombe, Sarah, Reynolds, Gary, McDonald, David, Fuller, Andrew, Green, Kile, Filby, Andrew, Forrest, Ian, Ruchaud-Sparagano, Marie-Helene, Scott, Jonathan, Collin, Matthew, Haniffa, Muzlifah, Simpson, A John
Published in Nature communications (30.04.2019)
Published in Nature communications (30.04.2019)
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Journal Article
Single-cell insights into immune dysregulation in rheumatoid arthritis flare versus drug-free remission
Baker, Kenneth F, McDonald, David, Hulme, Gillian, Hussain, Rafiqul, Coxhead, Jonathan, Swan, David, Schulz, Axel R, Mei, Henrik E, MacDonald, Lucy, Pratt, Arthur G, Filby, Andrew, Anderson, Amy E, Isaacs, John D
Published in Nature communications (05.02.2024)
Published in Nature communications (05.02.2024)
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Journal Article
Hyperactive CREB subpopulations increase during therapy in pediatric B-lineage acute lymphoblastic leukemia
Masic, Dino, Fee, Kayleigh, Bell, Hayden, Case, Marian, Witherington, Gabby, Lansbury, Sophie, Ojeda-Garcia, Juan, McDonald, David, Schwab, Claire, Van Delft, Frederik W, Filby, Andrew, Irving, Julie Anne Elizabeth
Published in Haematologica (Roma) (01.04.2023)
Published in Haematologica (Roma) (01.04.2023)
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Journal Article
Asymmetric Segregation of Polarized Antigen on B Cell Division Shapes Presentation Capacity
Thaunat, Olivier, Granja, Aitor G., Barral, Patricia, Filby, Andrew, Montaner, Beatriz, Collinson, Lucy, Martinez-Martin, Nuria, Harwood, Naomi E., Bruckbauer, Andreas, Batista, Facundo D.
Published in Science (American Association for the Advancement of Science) (27.01.2012)
Published in Science (American Association for the Advancement of Science) (27.01.2012)
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Journal Article
Protocol for in vitro co-culture, proliferation, and cell cycle analyses of patient-derived leukemia cells
Parker, Jessica, Hockney, Sean, Knill, Carly, McDonald, David, Filby, Andrew, Pal, Deepali
Published in STAR protocols (20.09.2024)
Published in STAR protocols (20.09.2024)
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Journal Article
Multiple Immunostainings with Different Epitope Retrievals-The FOLGAS Protocol
von Schoenfeld, Anna, Bronsert, Peter, Poc, Michael, Fuller, Andrew, Filby, Andrew, Kraft, Stefan, Kurowski, Konrad, Sörensen, Kristin, Huber, Julia, Pfeiffer, Jens, Proietti, Michele, Stehl, Verena, Werner, Martin, Seidl, Maximilian
Published in International journal of molecular sciences (25.12.2021)
Published in International journal of molecular sciences (25.12.2021)
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Journal Article
Imaging mass cytometry analysis of Becker muscular dystrophy muscle samples reveals different stages of muscle degeneration
Piñol-Jurado, Patricia, Verdú-Díaz, José, Fernández-Simón, Esther, Domínguez-González, Cristina, Hernández-Lain, Aurelio, Lawless, Conor, Vincent, Amy, González-Chamorro, Alejandro, Villalobos, Elisa, Monceau, Alexandra, Laidler, Zoe, Mehra, Priyanka, Clark, James, Filby, Andrew, McDonald, David, Rushton, Paul, Bowey, Andrew, Alonso Pérez, Jorge, Tasca, Giorgio, Marini-Bettolo, Chiara, Guglieri, Michela, Straub, Volker, Suárez-Calvet, Xavier, Díaz-Manera, Jordi
Published in Scientific reports (09.02.2024)
Published in Scientific reports (09.02.2024)
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Journal Article
Stepwise B-cell-dependent expansion of T helper clonotypes diversifies the T-cell response
Merkenschlager, Julia, Ploquin, Mickaël J, Eksmond, Urszula, Andargachew, Rakieb, Thorborn, Georgina, Filby, Andrew, Pepper, Marion, Evavold, Brian, Kassiotis, George
Published in Nature communications (05.01.2016)
Published in Nature communications (05.01.2016)
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