Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
Schmid, Robin, Petras, Daniel, Nothias, Louis-Félix, Wang, Mingxun, Aron, Allegra T., Jagels, Annika, Tsugawa, Hiroshi, Rainer, Johannes, Garcia-Aloy, Mar, Dührkop, Kai, Korf, Ansgar, Pluskal, Tomáš, Kameník, Zdeněk, Jarmusch, Alan K., Caraballo-Rodríguez, Andrés Mauricio, Weldon, Kelly C., Nothias-Esposito, Melissa, Aksenov, Alexander A., Bauermeister, Anelize, Albarracin Orio, Andrea, Grundmann, Carlismari O., Vargas, Fernando, Koester, Irina, Gauglitz, Julia M., Gentry, Emily C., Hövelmann, Yannick, Kalinina, Svetlana A., Pendergraft, Matthew A., Panitchpakdi, Morgan, Tehan, Richard, Le Gouellec, Audrey, Aleti, Gajender, Mannochio Russo, Helena, Arndt, Birgit, Hübner, Florian, Hayen, Heiko, Zhi, Hui, Raffatellu, Manuela, Prather, Kimberly A., Aluwihare, Lihini I., Böcker, Sebastian, McPhail, Kerry L., Humpf, Hans-Ulrich, Karst, Uwe, Dorrestein, Pieter C.
Published in Nature communications (22.06.2021)
Published in Nature communications (22.06.2021)
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Journal Article
Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data
Aksenov, Alexander A., Laponogov, Ivan, Zhang, Zheng, Doran, Sophie L. F., Belluomo, Ilaria, Veselkov, Dennis, Bittremieux, Wout, Nothias, Louis Felix, Nothias-Esposito, Mélissa, Maloney, Katherine N., Misra, Biswapriya B., Melnik, Alexey V., Smirnov, Aleksandr, Du, Xiuxia, Jones, Kenneth L., Dorrestein, Kathleen, Panitchpakdi, Morgan, Ernst, Madeleine, van der Hooft, Justin J. J., Gonzalez, Mabel, Carazzone, Chiara, Amézquita, Adolfo, Callewaert, Chris, Morton, James T., Quinn, Robert A., Bouslimani, Amina, Orio, Andrea Albarracín, Petras, Daniel, Smania, Andrea M., Couvillion, Sneha P., Burnet, Meagan C., Nicora, Carrie D., Zink, Erika, Metz, Thomas O., Artaev, Viatcheslav, Humston-Fulmer, Elizabeth, Gregor, Rachel, Meijler, Michael M., Mizrahi, Itzhak, Eyal, Stav, Anderson, Brooke, Dutton, Rachel, Lugan, Raphaël, Boulch, Pauline Le, Guitton, Yann, Prevost, Stephanie, Poirier, Audrey, Dervilly, Gaud, Le Bizec, Bruno, Fait, Aaron, Persi, Noga Sikron, Song, Chao, Gashu, Kelem, Coras, Roxana, Guma, Monica, Manasson, Julia, Scher, Jose U., Barupal, Dinesh Kumar, Alseekh, Saleh, Fernie, Alisdair R., Mirnezami, Reza, Vasiliou, Vasilis, Schmid, Robin, Borisov, Roman S., Kulikova, Larisa N., Knight, Rob, Wang, Mingxun, Hanna, George B., Dorrestein, Pieter C., Veselkov, Kirill
Published in Nature biotechnology (01.02.2021)
Published in Nature biotechnology (01.02.2021)
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Journal Article
Longitudinal Evolution of the Pseudomonas-Derived Cephalosporinase (PDC) Structure and Activity in a Cystic Fibrosis Patient Treated with β-Lactams
Colque, Claudia A, Albarracín Orio, Andrea G, Tomatis, Pablo E, Dotta, Gina, Moreno, Diego M, Hedemann, Laura G, Hickman, Rachel A, Sommer, Lea M, Feliziani, Sofía, Moyano, Alejandro J, Bonomo, Robert A, K Johansen, Helle, Molin, Søren, Vila, Alejandro J, Smania, Andrea M
Published in mBio (26.10.2022)
Published in mBio (26.10.2022)
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Journal Article
Fungal–bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds
Albarracín Orio, Andrea G., Petras, Daniel, Tobares, Romina A., Aksenov, Alexander A., Wang, Mingxun, Juncosa, Florencia, Sayago, Pamela, Moyano, Alejandro J., Dorrestein, Pieter C., Smania, Andrea M.
Published in Communications biology (12.11.2020)
Published in Communications biology (12.11.2020)
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Journal Article
Switching between monocot and dicot crops in rotation schemes of Argentinean productive fields results in an increment of arbuscular mycorrhizal fungi diversity
Albarracín Orio, Andrea G., Brücher, Elsa, Ducasse, Daniel A.
Published in Applied soil ecology : a section of Agriculture, ecosystems & environment (01.02.2016)
Published in Applied soil ecology : a section of Agriculture, ecosystems & environment (01.02.2016)
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Journal Article
Draft Genome Sequence of Bacillus subtilis ALBA01, a Strain with Antagonistic Activity against the Soilborne Fungal Pathogen of Onion Setophoma terrestris
Albarracín Orio, Andrea G, Tobares, Romina A, Ducasse, Daniel A, Smania, Andrea M
Published in Genome announcements (Washington, DC) (02.06.2016)
Published in Genome announcements (Washington, DC) (02.06.2016)
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Journal Article
Characterization of In Vitro-Generated and Clinical Optochin-Resistant Strains of Streptococcus pneumoniae Isolated from Argentina
Cortes, Paulo R, Orio, Andrea G. Albarracín, Regueira, Mabel, Piñas, Germán E, Echenique, José
Published in Journal of Clinical Microbiology (01.06.2008)
Published in Journal of Clinical Microbiology (01.06.2008)
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Journal Article
Bacillus subtilis ALBA01 alleviates onion pink root by antagonizing the pathogen Setophoma terrestris and allowing physiological status maintenance
Sayago, Pamela, Juncosa, Florencia, Albarracín Orio, Andrea Georgina, Luna, Darío Fernando, Molina, Gabriela, Lafi, Jorge, Ducasse, Daniel Adrián
Published in European journal of plant pathology (01.07.2020)
Published in European journal of plant pathology (01.07.2020)
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Journal Article
A new serotype 14 variant of the pneumococcal Spain9V-3 international clone detected in the central region of Argentina
Albarracin Orio, Andrea G, Cortes, Paulo R, Tregnaghi, Miguel, Pinas, German E, Argentinean Network Pneumococcus Study Group, Echenique, Jose R
Published in Journal of medical microbiology (01.08.2008)
Published in Journal of medical microbiology (01.08.2008)
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Journal Article
strain of Bacillus subtilis subsp. subtilis shows a specific antagonistic activity against the soil-borne pathogen of onion Setophoma terrestris
Albarracín Orio, Andrea Georgina, Brücher, Elsa, Ducasse, Daniel Adrián
Published in European journal of plant pathology (01.01.2016)
Published in European journal of plant pathology (01.01.2016)
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Journal Article
Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS
Aksenov, Alexander, Laponogov, Ivan, Zhang, Zheng, Doran, Sophie, Belluomo, Ilaria, Veselkov, Dennis, Bittremieux, Wout, Louis Felix Nothias, Nothias-Esposito, Melissa, Maloney, Katherine N, Misra, Biswapriya Biswavas, Melnik, Alexey V, Jones, Kenneth L, Dorrestein, Kathleen, Morgan Panitchpakdi, Ernst, Madeleine, Justin Jj Van Der Hooft, Gonzalez, Mabel, Carazzone, Chiara, Amezquita, Adolfo, Callewaert, Chris, Morton, Jamie, Quinn, Robert Andrew, Bouslimani, Amina, Andrea Albarracin Orio, Petras, Daniel, Smania, Andrea Maria, Couvillion, Sneha P, Burnet, Meagan C, Nicora, Carrie D, Zink, Erika, Metz, Thomas O, Artaev, Viatcheslav, Humston-Fulmer, Elizabeth, Gregor, Rachel, Meijler, Michael M, Mizrahi, Itzhak, Stav Eyal, Anderson, Brooke, Dutton, Rachel J, Lugan, Raphael, Pauline Le Boulch, Guitton, Yann, Prevost, Stephanie, Poirier, Audrey, Gaud Dervilly, Bruno Le Bizec, Fait, Aharon, Sikron, Noga, Song, Chao, Gashu, Kelem, Coras, Roxana, Guma, Monica, Manasson, Julia, Scher, Jose U, Barupal, Dinesh K, Saleh Alseekh, Fernie, Alisdair, Fernie, Alisdair R, Mirnezami, Reza, Vasiliou, Vasilis, Schmid, Robin, Borisov, Roman S, Kulikova, Larisa N, Knight, Rob, Wang, Mingxun, Hanna, George, Dorrestein, Pieter C, Veselkov, Kirill
Published in bioRxiv (14.01.2020)
Published in bioRxiv (14.01.2020)
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Paper
Fungal-bacterial interaction selects for quorum sensing mutants and a metabolic shift towards the production of natural antifungal compounds
Albarracin Orio, Andrea G, Petras, Daniel, Tobares, Romina A, Aksenov, Alexander, Wang, Mingxun, Juncosa, Florencia, Sayago, Pamela, Moyano, Alejandro J, Dorrestein, Pieter C, Smania, Andrea M, Ducasse, Daniel
Published in bioRxiv (16.01.2020)
Published in bioRxiv (16.01.2020)
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Paper
Hypermutator Pseudomonas aeruginosa exploits multiple genetic pathways to develop multidrug resistance during long term infections in the airways of cystic fibrosis patients
Colque, Claudia Antonella, Andrea Albarracin Orio, Feliziani, Sofia, Marvig, Rasmus Likke, Tobares, Romina Alin, Johansen, Helle Krogh, Molin, Soren, Smania, Andrea Maria
Published in bioRxiv (17.10.2019)
Published in bioRxiv (17.10.2019)
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Paper
Ion Identity Molecular Networking in the GNPS Environment
Schmid, Robin, Petras, Daniel, Louis-Felix Nothias, Wang, Mingxun, Aron, Allegra T, Jagels, Annika, Tsugawa, Hiroshi, Rainer, Johannes, Garcia-Aloy, Mar, Duehrkop, Kai, Korf, Ansgar, Pluskal, Tomas, Kamenik, Zdenek, Jarmusch, Alan K, Caraballo-Rodriguez, Andres Mauricio, Weldon, Kelly, Nothias-Esposito, Melissa, Aksenov, Alexander A, Bauermeister, Anelize, Albarracin-Orio, Andrea, Grundmann, Carlismari O, Vargas, Fernando, Koester, Irina, Gauglitz, Julia M, Gentry, Emily C, Hoevelmann, Yannick, Kalinina, Svetlana A, Pendergraft, Matthew A, Panitchpakdi, Morgan W, Tehan, Richard, Audrey Le Gouellec, Aleti, Gajender, Russo, Helena Mannochio, Arndt, Birgit, Huebner, Florian, Hayen, Heiko, Hui, Zhi, Raffatellu, Manuela, Prather, Kimberly A, Aluwihare, Lihini I, Boecker, Sebastian, Mcphail, Kerry L, Hans-Ulrich Humpf, Karst, Uwe, Dorrestein, Pieter C
Published in bioRxiv (13.05.2020)
Published in bioRxiv (13.05.2020)
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