The genomic ecosystem of transposable elements in maize
Stitzer, Michelle C, Anderson, Sarah N, Springer, Nathan M, Ross-Ibarra, Jeffrey
Published in PLoS genetics (14.10.2021)
Published in PLoS genetics (14.10.2021)
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Journal Article
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize
Oka, Rurika, Zicola, Johan, Weber, Blaise, Anderson, Sarah N, Hodgman, Charlie, Gent, Jonathan I, Wesselink, Jan-Jaap, Springer, Nathan M, Hoefsloot, Huub C J, Turck, Franziska, Stam, Maike
Published in Genome Biology (21.07.2017)
Published in Genome Biology (21.07.2017)
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Journal Article
Monitoring the interplay between transposable element families and DNA methylation in maize
Noshay, Jaclyn M, Anderson, Sarah N, Zhou, Peng, Ji, Lexiang, Ricci, William, Lu, Zefu, Stitzer, Michelle C, Crisp, Peter A, Hirsch, Candice N, Zhang, Xiaoyu, Schmitz, Robert J, Springer, Nathan M
Published in PLoS genetics (09.09.2019)
Published in PLoS genetics (09.09.2019)
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Journal Article
Widespread imprinting of transposable elements and variable genes in the maize endosperm
Anderson, Sarah N, Zhou, Peng, Higgins, Kaitlin, Brandvain, Yaniv, Springer, Nathan M
Published in PLoS genetics (08.04.2021)
Published in PLoS genetics (08.04.2021)
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Journal Article
Transcriptomes of isolated Oryza sativa gametes characterized by deep sequencing: evidence for distinct sex‐dependent chromatin and epigenetic states before fertilization
Anderson, Sarah N, Johnson, Cameron S, Jones, Daniel S, Conrad, Liza J, Gou, Xiaoping, Russell, Scott D, Sundaresan, Venkatesan
Published in The Plant journal : for cell and molecular biology (01.12.2013)
Published in The Plant journal : for cell and molecular biology (01.12.2013)
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Journal Article
Whole-genome variation of transposable element insertions in a maize diversity panel
Qiu, Yinjie, O'Connor, Christine H, Della Coletta, Rafael, Renk, Jonathan S, Monnahan, Patrick J, Noshay, Jaclyn M, Liang, Zhikai, Gilbert, Amanda, Anderson, Sarah N, McGaugh, Suzanne E, Springer, Nathan M, Hirsch, Candice N
Published in G3 : genes - genomes - genetics (01.10.2021)
Published in G3 : genes - genomes - genetics (01.10.2021)
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Journal Article
The Zygotic Transition Is Initiated in Unicellular Plant Zygotes with Asymmetric Activation of Parental Genomes
Anderson, Sarah N., Johnson, Cameron S., Chesnut, Joshua, Jones, Daniel S., Khanday, Imtiyaz, Woodhouse, Margaret, Li, Chenxin, Conrad, Liza J., Russell, Scott D., Sundaresan, Venkatesan
Published in Developmental cell (06.11.2017)
Published in Developmental cell (06.11.2017)
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Journal Article
Potential roles for transposable elements in creating imprinted expression
Anderson, Sarah N, Springer, Nathan M
Published in Current opinion in genetics & development (01.04.2018)
Published in Current opinion in genetics & development (01.04.2018)
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Journal Article
Transposable elements contribute to dynamic genome content in maize
Anderson, Sarah N., Stitzer, Michelle C., Brohammer, Alex B., Zhou, Peng, Noshay, Jaclyn M., O'Connor, Christine H., Hirsch, Cory D., Ross‐Ibarra, Jeffrey, Hirsch, Candice N., Springer, Nathan M.
Published in The Plant journal : for cell and molecular biology (01.12.2019)
Published in The Plant journal : for cell and molecular biology (01.12.2019)
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Journal Article
The maize W22 genome provides a foundation for functional genomics and transposon biology
Springer, Nathan M, Anderson, Sarah N, Andorf, Carson M, Ahern, Kevin R, Bai, Fang, Barad, Omer, Barbazuk, W Brad, Bass, Hank W, Baruch, Kobi, Ben-Zvi, Gil, Buckler, Edward S, Bukowski, Robert, Campbell, Michael S, Cannon, Ethalinda K S, Chomet, Paul, Dawe, R Kelly, Davenport, Ruth, Dooner, Hugo K, Du, Limei He, Du, Chunguang, Easterling, Katherine A, Gault, Christine, Guan, Jiahn-Chou, Hunter, Charles T, Jander, Georg, Jiao, Yinping, Koch, Karen E, Kol, Guy, Köllner, Tobias G, Kudo, Toru, Li, Qing, Lu, Fei, Mayfield-Jones, Dustin, Mei, Wenbin, McCarty, Donald R, Noshay, Jaclyn M, Portwood, 2nd, John L, Ronen, Gil, Settles, A Mark, Shem-Tov, Doron, Shi, Jinghua, Soifer, Ilya, Stein, Joshua C, Stitzer, Michelle C, Suzuki, Masaharu, Vera, Daniel L, Vollbrecht, Erik, Vrebalov, Julia T, Ware, Doreen, Wei, Sharon, Wimalanathan, Kokulapalan, Woodhouse, Margaret R, Xiong, Wenwei, Brutnell, Thomas P
Published in Nature genetics (01.09.2018)
Published in Nature genetics (01.09.2018)
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Journal Article
The maize gene maternal derepression of r1 encodes a DNA glycosylase that demethylates DNA and reduces siRNA expression in the endosperm
Gent, Jonathan I, Higgins, Kaitlin M, Swentowsky, Kyle W, Fu, Fang-Fang, Zeng, Yibing, Kim, Dong won, Dawe, R Kelly, Springer, Nathan M, Anderson, Sarah N
Published in The Plant cell (27.09.2022)
Published in The Plant cell (27.09.2022)
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Journal Article
Differences in activity and stability drive transposable element variation in tropical and temperate maize
Ou, Shujun, Scheben, Armin, Collins, Tyler, Qiu, Yinjie, Seetharam, Arun S., Menard, Claire C., Manchanda, Nancy, Gent, Jonathan I., Schatz, Michael C., Anderson, Sarah N., Hufford, Matthew B., Hirsch, Candice N.
Published in Genome research (09.09.2024)
Published in Genome research (09.09.2024)
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Journal Article
Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons
Noshay, Jaclyn M, Marand, Alexandre P, Anderson, Sarah N, Zhou, Peng, Mejia Guerra, Maria Katherine, Lu, Zefu, O’Connor, Christine H, Crisp, Peter A, Hirsch, Candice N, Schmitz, Robert J, Springer, Nathan M
Published in Genetics (Austin) (03.03.2021)
Published in Genetics (Austin) (03.03.2021)
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Journal Article
Opportunities to Use DNA Methylation to Distil Functional Elements in Large Crop Genomes
Crisp, Peter A., Noshay, Jaclyn M., Anderson, Sarah N., Springer, Nathan M.
Published in Molecular plant (04.03.2019)
Published in Molecular plant (04.03.2019)
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Journal Article
Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize
Xue, Wei, Anderson, Sarah N, Wang, Xufeng, Yang, Liyan, Crisp, Peter A, Li, Qing, Noshay, Jaclyn, Albert, Patrice S, Birchler, James A, Bilinski, Paul, Stitzer, Michelle C, Ross-Ibarra, Jeffrey, Flint-Garcia, Sherry, Chen, Xuemei, Springer, Nathan M, Doebley, John F
Published in Genetics (Austin) (01.09.2019)
Published in Genetics (Austin) (01.09.2019)
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Journal Article
The Genomic Ecosystem of Transposable Elements in Maize
Stitzer, Michelle C, Anderson, Sarah N, Springer, Nathan M, Ross-Ibarra, Jeffrey
Published in bioRxiv (28.02.2019)
Published in bioRxiv (28.02.2019)
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Paper
Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize
Xue, Wei, Anderson, Sarah N, Wang, Xufeng, Yang, Liyan, Crisp, Peter A, Li, Qing, Noshay, Jaclyn, Albert, Patrice S, Birchler, James A, Bilinski, Paul, Stitzer, Michelle C, Ross-Ibarra, Jeffrey, Flint-Garcia, Sherry, Chen, Xuemei, Springer, Nathan M, Doebley, John F
Published in Genetics (Austin) (01.09.2019)
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Published in Genetics (Austin) (01.09.2019)
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