Gene count normalization in single-cell imaging-based spatially resolved transcriptomics
Atta, Lyla, Kalen Clifton, Anant, Manjari, Aihara, Gohta, Fan, Jean
Published in Genome Biology (12.06.2024)
Published in Genome Biology (12.06.2024)
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STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping
Clifton, Kalen, Anant, Manjari, Aihara, Gohta, Atta, Lyla, Aimiuwu, Osagie K, Kebschull, Justus M, Miller, Michael I, Tward, Daniel, Fan, Jean
Published in Nature communications (08.12.2023)
Published in Nature communications (08.12.2023)
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Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections
Stouffer, Kaitlin M, Trouvé, Alain, Younes, Laurent, Kunst, Michael, Ng, Lydia, Zeng, Hongkui, Anant, Manjari, Fan, Jean, Kim, Yongsoo, Chen, Xiaoyin, Rue, Mara, Miller, Michael I
Published in Nature communications (25.04.2024)
Published in Nature communications (25.04.2024)
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Journal Article
Alignment of spatial transcriptomics data using diffeomorphic metric mapping
Clifton, Kalen, Anant, Manjari, Aihara, Gohta, Atta, Lyla, Aimiuwu, Osagie K, Kebschull, Justus M, Miller, Michael I, Tward, Daniel, Fan, Jean
Published in bioRxiv : the preprint server for biology (19.08.2023)
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Published in bioRxiv : the preprint server for biology (19.08.2023)
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A Universal Method for Crossing Molecular and Atlas Modalities using Simplex-Based Image Varifolds and Quadratic Programming
Stouffer, Kaitlin M, Trouv, Alain, Younes, Laurent, Kunst, Michael, Ng, Lydia, Zeng, Hongkui, Anant, Manjari, Fan, Jean, Kim, Yongsoo, Miller, Michael I
Published in bioRxiv : the preprint server for biology (29.03.2023)
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Published in bioRxiv : the preprint server for biology (29.03.2023)
Journal Article
A Universal Method for Crossing Molecular and Atlas Modalities using Simplex-Based Image Varifolds and Quadratic Programming
Stouffer, Kaitlin M, Trouv, Alain, Younes, Laurent, Kunst, Michael, Ng, Lydia, Zeng, Hongkui, Anant, Manjari, Fan, Jean, Kim, Yongsoo, Miller, Michael I
Published in bioRxiv (29.03.2023)
Published in bioRxiv (29.03.2023)
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