The wheat powdery mildew genome shows the unique evolution of an obligate biotroph
Wicker, Thomas, Oberhaensli, Simone, Parlange, Francis, Buchmann, Jan P, Shatalina, Margarita, Roffler, Stefan, Ben-David, Roi, Doležel, Jaroslav, Šimková, Hana, Schulze-Lefert, Paul, Spanu, Pietro D, Bruggmann, Rémy, Amselem, Joelle, Quesneville, Hadi, Ver Loren van Themaat, Emiel, Paape, Timothy, Shimizu, Kentaro K, Keller, Beat
Published in Nature genetics (01.09.2013)
Published in Nature genetics (01.09.2013)
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Journal Article
Ten steps to get started in Genome Assembly and Annotation
Dominguez Del Angel, Victoria, Hjerde, Erik, Sterck, Lieven, Capella-Gutierrez, Salvadors, Notredame, Cederic, Vinnere Pettersson, Olga, Amselem, Joelle, Bouri, Laurent, Bocs, Stephanie, Klopp, Christophe, Gibrat, Jean-Francois, Vlasova, Anna, Leskosek, Brane L, Soler, Lucile, Binzer-Panchal, Mahesh, Lantz, Henrik
Published in F1000 research (2018)
Published in F1000 research (2018)
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Publication
Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon
Amselem, Joelle, Vigouroux, Marielle, Oberhaensli, Simone, Brown, James K M, Bindschedler, Laurence V, Skamnioti, Pari, Wicker, Thomas, Spanu, Pietro D, Quesneville, Hadi, Sacristán, Soledad
Published in BMC genomics (10.11.2015)
Published in BMC genomics (10.11.2015)
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Journal Article
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus
Perlin, Michael H, Amselem, Joelle, Fontanillas, Eric, Toh, Su San, Chen, Zehua, Goldberg, Jonathan, Duplessis, Sebastien, Henrissat, Bernard, Young, Sarah, Zeng, Qiandong, Aguileta, Gabriela, Petit, Elsa, Badouin, Helene, Andrews, Jared, Razeeq, Dominique, Gabaldón, Toni, Quesneville, Hadi, Giraud, Tatiana, Hood, Michael E, Schultz, David J, Cuomo, Christina A
Published in BMC genomics (16.06.2015)
Published in BMC genomics (16.06.2015)
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Journal Article
first set of expressed sequence tags (EST) from the medicinal mushroom Agaricus subrufescens delivers resource for gene discovery and marker development
Foulongne-Oriol, Marie, Lapalu, Nicolas, Férandon, Cyril, Spataro, Cathy, Ferrer, Nathalie, Amselem, Joelle, Savoie, Jean-Michel
Published in Applied microbiology and biotechnology (01.09.2014)
Published in Applied microbiology and biotechnology (01.09.2014)
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Journal Article
The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release
Lesur, Isabelle, Le Provost, Grégoire, Bento, Pascal, Da Silva, Corinne, Leplé, Jean-Charles, Murat, Florent, Ueno, Saneyoshi, Bartholomé, Jerôme, Lalanne, Céline, Ehrenmann, François, Noirot, Céline, Burban, Christian, Léger, Valérie, Amselem, Joelle, Belser, Caroline, Quesneville, Hadi, Stierschneider, Michael, Fluch, Silvia, Feldhahn, Lasse, Tarkka, Mika, Herrmann, Sylvie, Buscot, François, Klopp, Christophe, Kremer, Antoine, Salse, Jérôme, Aury, Jean-Marc, Plomion, Christophe
Published in BMC genomics (21.02.2015)
Published in BMC genomics (21.02.2015)
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Journal Article
GnpIS: an information system to integrate genetic and genomic data from plants and fungi
Steinbach, Delphine, Alaux, Michael, Amselem, Joelle, Choisne, Nathalie, Durand, Sophie, Flores, Raphaël, Keliet, Aminah-Olivia, Kimmel, Erik, Lapalu, Nicolas, Luyten, Isabelle, Michotey, Célia, Mohellibi, Nacer, Pommier, Cyril, Reboux, Sébastien, Valdenaire, Dorothée, Verdelet, Daphné, Quesneville, Hadi
Published in Database : the journal of biological databases and curation (2013)
Published in Database : the journal of biological databases and curation (2013)
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Journal Article
A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene
Zhong, Ziming, Marcel, Thierry C., Hartmann, Fanny E., Ma, Xin, Plissonneau, Clémence, Zala, Marcello, Ducasse, Aurélie, Confais, Johann, Compain, Jérôme, Lapalu, Nicolas, Amselem, Joëlle, McDonald, Bruce A., Croll, Daniel, Palma‐Guerrero, Javier
Published in The New phytologist (01.04.2017)
Published in The New phytologist (01.04.2017)
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Journal Article
A secreted protease-like protein in Zymoseptoria tritici is responsible for avirulence on Stb9 resistance gene in wheat
Amezrou, Reda, Audéon, Colette, Compain, Jérôme, Gélisse, Sandrine, Ducasse, Aurélie, Saintenac, Cyrille, Lapalu, Nicolas, Louet, Clémentine, Orford, Simon, Croll, Daniel, Amselem, Joëlle, Fillinger, Sabine, Marcel, Thierry C
Published in PLoS pathogens (12.05.2023)
Published in PLoS pathogens (12.05.2023)
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Journal Article
Quantitative pathogenicity and host adaptation in a fungal plant pathogen revealed by whole-genome sequencing
Amezrou, Reda, Ducasse, Aurélie, Compain, Jérôme, Lapalu, Nicolas, Pitarch, Anais, Dupont, Laetitia, Confais, Johann, Goyeau, Henriette, Kema, Gert H. J., Croll, Daniel, Amselem, Joëlle, Sanchez-Vallet, Andrea, Marcel, Thierry C.
Published in Nature communications (02.03.2024)
Published in Nature communications (02.03.2024)
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Journal Article
At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions
Venice, Francesco, Ghignone, Stefano, Salvioli di Fossalunga, Alessandra, Amselem, Joëlle, Novero, Mara, Xianan, Xie, Sędzielewska Toro, Kinga, Morin, Emmanuelle, Lipzen, Anna, Grigoriev, Igor V., Henrissat, Bernard, Martin, Francis M., Bonfante, Paola
Published in Environmental microbiology (01.01.2020)
Published in Environmental microbiology (01.01.2020)
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Journal Article
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Dallery, Jean-Félix, Lapalu, Nicolas, Zampounis, Antonios, Pigné, Sandrine, Luyten, Isabelle, Amselem, Joëlle, Wittenberg, Alexander H J, Zhou, Shiguo, de Queiroz, Marisa V, Robin, Guillaume P, Auger, Annie, Hainaut, Matthieu, Henrissat, Bernard, Kim, Ki-Tae, Lee, Yong-Hwan, Lespinet, Olivier, Schwartz, David C, Thon, Michael R, O'Connell, Richard J
Published in BMC genomics (29.08.2017)
Published in BMC genomics (29.08.2017)
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Journal Article
Deciphering Genome Content and Evolutionary Relationships of Isolates from the Fungus Magnaporthe oryzae Attacking Different Host Plants
Chiapello, Hélène, Mallet, Ludovic, Guérin, Cyprien, Aguileta, Gabriela, Amselem, Joëlle, Kroj, Thomas, Ortega-Abboud, Enrique, Lebrun, Marc-Henri, Henrissat, Bernard, Gendrault, Annie, Rodolphe, François, Tharreau, Didier, Fournier, Elisabeth
Published in Genome biology and evolution (09.10.2015)
Published in Genome biology and evolution (09.10.2015)
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Journal Article
pH effect on strain-specific transcriptomes of the take-all fungus
Gazengel, Kévin, Lebreton, Lionel, Lapalu, Nicolas, Amselem, Joëlle, Guillerm-Erckelboudt, Anne-Yvonne, Tagu, Denis, Daval, Stéphanie
Published in PloS one (30.07.2020)
Published in PloS one (30.07.2020)
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Journal Article
The botrydial biosynthetic gene cluster of Botrytis cinerea displays a bipartite genomic structure and is positively regulated by the putative Zn(II)(2)Cys(6) transcription factor BcBot6
Porquier, Antoine, Morgant, Guillaume, Moraga, Javier, Dalmais, Berengere, Luyten, Isabelle, Simon, Adeline, Pradier, Jean-Marc, Amselem, Joëlle, Gonzalez Collado, Isidro, Viaud, Muriel
Published in Fungal genetics and biology (01.11.2016)
Published in Fungal genetics and biology (01.11.2016)
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Journal Article
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts
Morel, Guillaume, Sterck, Lieven, Swennen, Dominique, Marcet-Houben, Marina, Onesime, Djamila, Levasseur, Anthony, Jacques, Noémie, Mallet, Sandrine, Couloux, Arnaux, Labadie, Karine, Amselem, Joëlle, Beckerich, Jean-Marie, Henrissat, Bernard, Van de Peer, Yves, Wincker, Patrick, Souciet, Jean-Luc, Gabaldón, Toni, Tinsley, Colin R., Casaregola, Serge
Published in Scientific reports (25.06.2015)
Published in Scientific reports (25.06.2015)
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Journal Article
Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis , Venturia pirina , Venturia aucupariae and Venturia asperata
Le Cam, Bruno, Sargent, Dan, Gouzy, Jérôme, Amselem, Joëlle, Bellanger, Marie-Noëlle, Bouchez, Olivier, Brown, Spencer, Caffier, Valérie, De Gracia, Marie, Debuchy, Robert, Duvaux, Ludovic, Payen, Thibaut, Sannier, Mélanie, Shiller, Jason, Collemare, Jérôme, Lemaire, Christophe
Published in G3 : genes - genomes - genetics (01.08.2019)
Published in G3 : genes - genomes - genetics (01.08.2019)
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Journal Article
RepetDB: a unified resource for transposable element references
Amselem, Joëlle, Cornut, Guillaume, Choisne, Nathalie, Alaux, Michael, Alfama-Depauw, Françoise, Jamilloux, Véronique, Maumus, Florian, Letellier, Thomas, Luyten, Isabelle, Pommier, Cyril, Adam-Blondon, Anne-Françoise, Quesneville, Hadi
Published in Mobile DNA (29.01.2019)
Published in Mobile DNA (29.01.2019)
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Journal Article
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales
Castanera, Raúl, Pérez, Gúmer, López-Varas, Leticia, Amselem, Joëlle, LaButti, Kurt, Singan, Vasanth, Lipzen, Anna, Haridas, Sajeet, Barry, Kerrie, Grigoriev, Igor V, Pisabarro, Antonio G, Ramírez, Lucía
Published in BMC genomics (16.11.2017)
Published in BMC genomics (16.11.2017)
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