Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease
Nativio, Raffaella, Donahue, Greg, Berson, Amit, Lan, Yemin, Amlie-Wolf, Alexandre, Tuzer, Ferit, Toledo, Jon B., Gosai, Sager J., Gregory, Brian D., Torres, Claudio, Trojanowski, John Q., Wang, Li-San, Johnson, F. Brad, Bonini, Nancy M., Berger, Shelley L.
Published in Nature neuroscience (01.04.2018)
Published in Nature neuroscience (01.04.2018)
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Journal Article
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons
Liu, Elaine Y., Russ, Jenny, Cali, Christopher P., Phan, Jessica M., Amlie-Wolf, Alexandre, Lee, Edward B.
Published in Cell reports (Cambridge) (30.04.2019)
Published in Cell reports (Cambridge) (30.04.2019)
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Journal Article
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products
Kuksa, Pavel P, Amlie-Wolf, Alexandre, Katanić, Živadin, Valladares, Otto, Wang, Li-San, Leung, Yuk Yee
Published in Bioinformatics (15.03.2019)
Published in Bioinformatics (15.03.2019)
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DASHR: database of small human noncoding RNAs
Leung, Yuk Yee, Kuksa, Pavel P, Amlie-Wolf, Alexandre, Valladares, Otto, Ungar, Lyle H, Kannan, Sampath, Gregory, Brian D, Wang, Li-San
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
Transcriptomic Changes Due to Cytoplasmic TDP-43 Expression Reveal Dysregulation of Histone Transcripts and Nuclear Chromatin
Amlie-Wolf, Alexandre, Ryvkin, Paul, Tong, Rui, Dragomir, Isabelle, Suh, EunRan, Xu, Yan, Van Deerlin, Vivianna M, Gregory, Brian D, Kwong, Linda K, Trojanowski, John Q, Lee, Virginia M-Y, Wang, Li-San, Lee, Edward B
Published in PloS one (28.10.2015)
Published in PloS one (28.10.2015)
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Journal Article
An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer’s disease
Nativio, Raffaella, Lan, Yemin, Donahue, Greg, Sidoli, Simone, Berson, Amit, Srinivasan, Ananth R., Shcherbakova, Oksana, Amlie-Wolf, Alexandre, Nie, Ji, Cui, Xiaolong, He, Chuan, Wang, Li-San, Garcia, Benjamin A., Trojanowski, John Q., Bonini, Nancy M., Berger, Shelley L.
Published in Nature genetics (01.10.2020)
Published in Nature genetics (01.10.2020)
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Journal Article
INFERNO: inferring the molecular mechanisms of noncoding genetic variants
Amlie-Wolf, Alexandre, Tang, Mitchell, Mlynarski, Elisabeth E, Kuksa, Pavel P, Valladares, Otto, Katanic, Zivadin, Tsuang, Debby, Brown, Christopher D, Schellenberg, Gerard D, Wang, Li-San
Published in Nucleic acids research (28.09.2018)
Published in Nucleic acids research (28.09.2018)
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Journal Article
Genome‐wide profiling of the noncoding regulatory mechanisms in Alzheimer’s disease: Genetics/genetic factors of Alzheimer's disease
Kleidermacher, Lauren, Kuksa, Pavel, Lee, Chien‐Yueh, Amlie‐Wolf, Alexandre, Schellenberg, Gerard D., Wang, Li‐San, Leung, Yuk Yee
Published in Alzheimer's & dementia (01.12.2020)
Published in Alzheimer's & dementia (01.12.2020)
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Journal Article
SPAR: small RNA-seq portal for analysis of sequencing experiments
Kuksa, Pavel P, Amlie-Wolf, Alexandre, Katanić, Živadin, Valladares, Otto, Wang, Li-San, Leung, Yuk Yee
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
Activity of the poly(A) binding protein MSUT2 determines susceptibility to pathological tau in the mammalian brain
Wheeler, Jeanna M, McMillan, Pamela, Strovas, Timothy J, Liachko, Nicole F, Amlie-Wolf, Alexandre, Kow, Rebecca L, Klein, Ronald L, Szot, Patricia, Robinson, Linda, Guthrie, Chris, Saxton, Aleen, Kanaan, Nicholas M, Raskind, Murray, Peskind, Elaine, Trojanowski, John Q, Lee, Virginia M Y, Wang, Li-San, Keene, C Dirk, Bird, Thomas, Schellenberg, Gerard D, Kraemer, Brian
Published in Science translational medicine (18.12.2019)
Published in Science translational medicine (18.12.2019)
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SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants
Kuksa, Pavel P, Lee, Chien-Yueh, Amlie-Wolf, Alexandre, Gangadharan, Prabhakaran, Mlynarski, Elizabeth E, Chou, Yi-Fan, Lin, Han-Jen, Issen, Heather, Greenfest-Allen, Emily, Valladares, Otto, Leung, Yuk Yee, Wang, Li-San
Published in Bioinformatics (01.06.2020)
Published in Bioinformatics (01.06.2020)
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Journal Article
Inferring the Molecular Mechanisms of Noncoding Alzheimer's Disease-Associated Genetic Variants
Amlie-Wolf, Alexandre, Tang, Mitchell, Way, Jessica, Dombroski, Beth, Jiang, Ming, Vrettos, Nicholas, Chou, Yi-Fan, Zhao, Yi, Kuzma, Amanda, Mlynarski, Elisabeth E, Leung, Yuk Yee, Brown, Christopher D, Wang, Li-San, Schellenberg, Gerard D
Published in Journal of Alzheimer's disease (01.01.2019)
Published in Journal of Alzheimer's disease (01.01.2019)
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Author Correction: An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer’s disease
Nativio, Raffaella, Lan, Yemin, Donahue, Greg, Sidoli, Simone, Berson, Amit, Srinivasan, Ananth R., Shcherbakova, Oksana, Amlie-Wolf, Alexandre, Nie, Ji, Cui, Xiaolong, He, Chuan, Wang, Li-San, Garcia, Benjamin A., Trojanowski, John Q., Bonini, Nancy M., Berger, Shelley L.
Published in Nature genetics (01.11.2020)
Published in Nature genetics (01.11.2020)
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Journal Article
P2‐083: Computational Identification of Regulatory Mechanisms Affected By Noncoding Variants Associated with Late‐Onset Alzheimer's Disease
Amlie-Wolf, Alexandre, Tang, Mitchell, King, Jessica, Dombroski, Beth A., Wang, Li-San, Schellenberg, Gerard D.
Published in Alzheimer's & dementia (01.07.2016)
Published in Alzheimer's & dementia (01.07.2016)
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Journal Article
INFERRING THE MOLECULAR MECHANISMS OF NONCODING AD-ASSOCIATED GENETIC VARIANTS
Amlie-Wolf, Alexandre, Tang, Mitchell, Dombroski, Beth A., Way, Jessica, Vrettos, Nikolaos, Chou, Yi-Fan, Mlynarski, Elizabeth E., Brown, Christopher D., Schellenberg, Gerard, Wang, Li-San
Published in Alzheimer's & dementia (01.07.2018)
Published in Alzheimer's & dementia (01.07.2018)
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Journal Article
P1‐145: INFERRING THE MOLECULAR MECHANISMS OF NONCODING AD‐ASSOCIATED GENETIC VARIANTS
Amlie-Wolf, Alexandre, Tang, Mitchell, Dombroski, Beth A., Way, Jessica, Vrettos, Nikolaos, Chou, Yi-Fan, Mlynarski, Elizabeth E., Brown, Christopher D., Schellenberg, Gerard, Wang, Li-San
Published in Alzheimer's & dementia (01.07.2018)
Published in Alzheimer's & dementia (01.07.2018)
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