RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping
Ali, Omar A, O'Rourke, Sean M, Amish, Stephen J, Meek, Mariah H, Luikart, Gordon, Jeffres, Carson, Miller, Michael R
Published in Genetics (Austin) (01.02.2016)
Published in Genetics (Austin) (01.02.2016)
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Journal Article
Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout
HOHENLOHE, PAUL A, AMISH, STEPHEN J, CATCHEN, JULIAN M, ALLENDORF, FRED W, LUIKART, GORDON
Published in Molecular ecology resources (01.03.2011)
Published in Molecular ecology resources (01.03.2011)
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Journal Article
Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application
Garner, Brittany A., Hand, Brian K., Amish, Stephen J., Bernatchez, Louis, Foster, Jeffrey T., Miller, Kristina M., Morin, Phillip A., Narum, Shawn R., O’Brien, Stephen J., Roffler, Gretchen, Templin, William D., Sunnucks, Paul, Strait, Jeffrey, Warheit, Kenneth I., Seamons, Todd R., Wenburg, John, Olsen, Jeffrey, Luikart, Gordon
Published in Trends in ecology & evolution (Amsterdam) (01.02.2016)
Published in Trends in ecology & evolution (Amsterdam) (01.02.2016)
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Journal Article
Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing
Hohenlohe, Paul A., Day, Mitch D., Amish, Stephen J., Miller, Michael R., Kamps-Hughes, Nick, Boyer, Matthew C., Muhlfeld, Clint C., Allendorf, Fred W., Johnson, Eric A., Luikart, Gordon
Published in Molecular ecology (01.06.2013)
Published in Molecular ecology (01.06.2013)
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Journal Article
Evidence for adaptive introgression of exons across a hybrid swarm in deer
Haines, Margaret L, Luikart, Gordon, Amish, Stephen J, Smith, Seth, Latch, Emily K
Published in BMC ecology and evolution (04.11.2019)
Published in BMC ecology and evolution (04.11.2019)
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Journal Article
RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays
AMISH, STEPHEN J., HOHENLOHE, PAUL A., PAINTER, SALLY, LEARY, ROBB F., MUHLFELD, CLINT, ALLENDORF, FRED W., LUIKART, GORDON
Published in Molecular ecology resources (01.07.2012)
Published in Molecular ecology resources (01.07.2012)
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Journal Article
Hybridization alters growth and migratory life‐history expression of native trout
Strait, Jeffrey T., Eby, Lisa A., Kovach, Ryan P., Muhlfeld, Clint C., Boyer, Matthew C., Amish, Stephen J., Smith, Seth, Lowe, Winsor H., Luikart, Gordon
Published in Evolutionary applications (01.03.2021)
Published in Evolutionary applications (01.03.2021)
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Journal Article
Increased eDNA detection sensitivity using a novel high‐volume water sampling method
Schabacker, Jenna C., Amish, Stephen J., Ellis, Bonnie K., Gardner, Beth, Miller, Dulaney L., Rutledge, Elizabeth A., Sepulveda, Adam J., Luikart, Gordon
Published in Environmental DNA (Hoboken, N.J.) (01.04.2020)
Published in Environmental DNA (Hoboken, N.J.) (01.04.2020)
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Journal Article
Mapping of Adaptive Traits Enabled by a High-Density Linkage Map for Lake Trout
Smith, Seth R, Amish, Stephen J, Bernatchez, Louis, Le Luyer, Jeremy, Wilson, Chris, Boeberitz, Olivia, Luikart, Gordon, Scribner, Kim T
Published in G3 : genes - genomes - genetics (01.06.2020)
Published in G3 : genes - genomes - genetics (01.06.2020)
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Journal Article
Assessing thermal adaptation using family-based association and F ST outlier tests in a threatened trout species
Amish, Stephen J, Ali, Omar, Peacock, Mary, Miller, Michael, Robinson, Morgan, Smith, Seth, Luikart, Gordon, Neville, Helen
Published in Molecular ecology (01.05.2019)
Published in Molecular ecology (01.05.2019)
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Journal Article
Assessing thermal adaptation using family‐based association and FST outlier tests in a threatened trout species
Amish, Stephen J., Ali, Omar, Peacock, Mary, Miller, Michael, Robinson, Morgan, Smith, Seth, Luikart, Gordon, Neville, Helen
Published in Molecular ecology (01.05.2019)
Published in Molecular ecology (01.05.2019)
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Journal Article
Legacy introductions and climatic variation explain spatiotemporal patterns of invasive hybridization in a native trout
Muhlfeld, Clint C., Kovach, Ryan P., Al‐Chokhachy, Robert, Amish, Stephen J., Kershner, Jeffrey L., Leary, Robb F., Lowe, Winsor H., Luikart, Gordon, Matson, Phil, Schmetterling, David A., Shepard, Bradley B., Westley, Peter A. H., Whited, Diane, Whiteley, Andrew, Allendorf, Fred W.
Published in Global change biology (01.11.2017)
Published in Global change biology (01.11.2017)
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Journal Article
Landscape Connectivity and Genetic Structure in a Mainstem and a Tributary Stonefly (Plecoptera) Species Using a Novel Reference Genome
Malison, Rachel L, Hand, Brian K, Winter, Emily, Giersch, J Joseph, Amish, Stephen J, Whited, Diane, Stanford, Jack A, Luikart, Gordon
Published in The Journal of heredity (23.07.2022)
Published in The Journal of heredity (23.07.2022)
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Journal Article
Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity
Harrisson, Katherine A., Amish, Stephen J., Pavlova, Alexandra, Narum, Shawn R., Telonis‐Scott, Marina, Rourke, Meaghan L., Lyon, Jarod, Tonkin, Zeb, Gilligan, Dean M., Ingram, Brett A., Lintermans, Mark, Gan, Han Ming, Austin, Christopher M., Luikart, Gordon, Sunnucks, Paul
Published in Molecular ecology (01.11.2017)
Published in Molecular ecology (01.11.2017)
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Journal Article
Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones
Kovach, Ryan P., Hand, Brian K., Hohenlohe, Paul A., Cosart, Ted F., Boyer, Matthew C., Neville, Helen H., Muhlfeld, Clint C., Amish, Stephen J., Carim, Kellie, Narum, Shawn R., Lowe, Winsor H., Allendorf, Fred W., Luikart, Gordon
Published in Proceedings of the Royal Society. B, Biological sciences (30.11.2016)
Published in Proceedings of the Royal Society. B, Biological sciences (30.11.2016)
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Journal Article
Candidate adaptive genes associated with lineage divergence: identifying SNPs via next-generation targeted resequencing in mule deer (Odocoileus hemionus)
Powell, John H., Amish, Stephen J., Haynes, Gwilym D., Luikart, Gordon, Latch, Emily K.
Published in Molecular ecology resources (01.09.2016)
Published in Molecular ecology resources (01.09.2016)
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Journal Article
Rapid SNP genotyping, sex identification, and hybrid-detection in threatened bull trout
Amish, Stephen J., Bernall, Shana, DeHaan, Patrick, Miller, Michael, O’Rourke, Sean, Boyer, Matthew C., Muhlfeld, Clint, Lodmell, Angela, Leary, Robb F., Luikart, Gordon
Published in Conservation genetics resources (01.12.2022)
Published in Conservation genetics resources (01.12.2022)
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Journal Article
Improved detection of rare, endangered and invasive trout in using a new large‐volume sampling method for eDNA capture
Sepulveda, Adam J., Schabacker, Jenna, Smith, Seth, Al‐Chokhachy, Robert, Luikart, Gordon, Amish, Stephen J.
Published in Environmental DNA (Hoboken, N.J.) (01.09.2019)
Published in Environmental DNA (Hoboken, N.J.) (01.09.2019)
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Journal Article
No evidence for ecological segregation protecting native trout from invasive hybridization
Kovach, Ryan P., Muhlfeld, Clint C., Al‐Chokhachy, Robert, Amish, Stephen J., Kershner, Jeffrey L., Leary, Robb F., Lowe, Winsor H., Luikart, Gordon, Matson, Phil, Schmetterling, David A., Shepard, Bradley B., Westley, Peter A. H., Whited, Diane, Whiteley, Andrew, Allendorf, Fred W.
Published in Global change biology (01.12.2017)
Published in Global change biology (01.12.2017)
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Journal Article