Rapid detection of identity-by-descent tracts for mega-scale datasets
Shemirani, Ruhollah, Belbin, Gillian M., Avery, Christy L., Kenny, Eimear E., Gignoux, Christopher R., Ambite, José Luis
Published in Nature communications (10.06.2021)
Published in Nature communications (10.06.2021)
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Journal Article
Using dynamic time warping self-organizing maps to characterize diurnal patterns in environmental exposures
Li, Kenan, Sward, Katherine, Deng, Huiyu, Morrison, John, Habre, Rima, Franklin, Meredith, Chiang, Yao-Yi, Ambite, Jose Luis, Wilson, John P., Eckel, Sandrah P.
Published in Scientific reports (15.12.2021)
Published in Scientific reports (15.12.2021)
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Journal Article
W-TSS: A Wavelet-Based Algorithm for Discovering Time Series Shapelets
Li, Kenan, Deng, Huiyu, Morrison, John, Habre, Rima, Franklin, Meredith, Chiang, Yao-Yi, Sward, Katherine, Gilliland, Frank D., Ambite, José Luis, Eckel, Sandrah P.
Published in Sensors (Basel, Switzerland) (28.08.2021)
Published in Sensors (Basel, Switzerland) (28.08.2021)
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Journal Article
NeuroBridge: a prototype platform for discovery of the long-tail neuroimaging data
Wang, Lei, Ambite, José Luis, Appaji, Abhishek, Bijsterbosch, Janine, Dockes, Jerome, Herrick, Rick, Kogan, Alex, Lander, Howard, Marcus, Daniel, Moore, Stephen M., Poline, Jean-Baptiste, Rajasekar, Arcot, Sahoo, Satya S., Turner, Matthew D., Wang, Xiaochen, Wang, Yue, Turner, Jessica A.
Published in Frontiers in neuroinformatics (31.08.2023)
Published in Frontiers in neuroinformatics (31.08.2023)
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Journal Article
q-Diffusion leverages the full dimensionality of gene coexpression in single-cell transcriptomics
Marmarelis, Myrl G., Littman, Russell, Battaglin, Francesca, Niedzwiecki, Donna, Venook, Alan, Ambite, Jose-Luis, Galstyan, Aram, Lenz, Heinz-Josef, Ver Steeg, Greg
Published in Communications biology (02.04.2024)
Published in Communications biology (02.04.2024)
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Journal Article
Learning the semantics of structured data sources
Taheriyan, Mohsen, Knoblock, Craig A., Szekely, Pedro, Ambite, José Luis
Published in Web semantics (01.03.2016)
Published in Web semantics (01.03.2016)
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Journal Article
EPS: automated feature selection in case–control studies using extreme pseudo-sampling
Shemirani, Ruhollah, Wenric, Stephane, Kenny, Eimear, Ambite, José Luis
Published in Bioinformatics (Oxford, England) (11.10.2021)
Published in Bioinformatics (Oxford, England) (11.10.2021)
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Journal Article
Toward a fine-scale population health monitoring system
Belbin, Gillian M., Cullina, Sinead, Wenric, Stephane, Soper, Emily R., Glicksberg, Benjamin S., Torre, Denis, Moscati, Arden, Wojcik, Genevieve L., Shemirani, Ruhollah, Beckmann, Noam D., Cohain, Ariella, Sorokin, Elena P., Park, Danny S., Ambite, Jose-Luis, Ellis, Steve, Auton, Adam, Bottinger, Erwin P., Cho, Judy H., Loos, Ruth J.F., Abul-Husn, Noura S., Zaitlen, Noah A., Gignoux, Christopher R., Kenny, Eimear E.
Published in Cell (15.04.2021)
Published in Cell (15.04.2021)
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Journal Article
The Next PAGE in Understanding Complex Traits: Design for the Analysis of Population Architecture Using Genetics and Epidemiology (PAGE) Study
Matise, Tara C., Ambite, Jose Luis, Buyske, Steven, Carlson, Christopher S., Cole, Shelley A., Crawford, Dana C., Haiman, Christopher A., Heiss, Gerardo, Kooperberg, Charles, Marchand, Loic Le, Manolio, Teri A., North, Kari E., Peters, Ulrike, Ritchie, Marylyn D., Hindorff, Lucia A., Haines, Jonathan L.
Published in American journal of epidemiology (01.10.2011)
Published in American journal of epidemiology (01.10.2011)
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Journal Article
Applying Multivariate Segmentation Methods to Human Activity Recognition From Wearable Sensors' Data
Li, Kenan, Habre, Rima, Deng, Huiyu, Urman, Robert, Morrison, John, Gilliland, Frank D, Ambite, José Luis, Stripelis, Dimitris, Chiang, Yao-Yi, Lin, Yijun, Bui, Alex At, King, Christine, Hosseini, Anahita, Vliet, Eleanne Van, Sarrafzadeh, Majid, Eckel, Sandrah P
Published in JMIR mHealth and uHealth (07.02.2019)
Published in JMIR mHealth and uHealth (07.02.2019)
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Journal Article
Comparison of deep learning architectures for predicting amyloid positivity in Alzheimer's disease, mild cognitive impairment, and healthy aging, from T1-weighted brain structural MRI
Chattopadhyay, Tamoghna, Ozarkar, Saket S, Buwa, Ketaki, Joshy, Neha Ann, Komandur, Dheeraj, Naik, Jayati, Thomopoulos, Sophia I, Ver Steeg, Greg, Ambite, Jose Luis, Thompson, Paul M
Published in Frontiers in neuroscience (02.07.2024)
Published in Frontiers in neuroscience (02.07.2024)
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Journal Article
A Scalable Data Integration and Analysis Architecture for Sensor Data of Pediatric Asthma
Stripelis, Dimitris, Ambite, Jose Luis, Yao-Yi Chiang, Eckel, Sandrah P., Habre, Rima
Published in 2017 IEEE 33rd International Conference on Data Engineering (ICDE) (01.04.2017)
Published in 2017 IEEE 33rd International Conference on Data Engineering (ICDE) (01.04.2017)
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Conference Proceeding
Journal Article
NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use
Sahoo, Satya S, Turner, Matthew D, Wang, Lei, Ambite, Jose Luis, Appaji, Abhishek, Rajasekar, Arcot, Lander, Howard M, Wang, Yue, Turner, Jessica A
Published in Frontiers in neuroinformatics (24.07.2023)
Published in Frontiers in neuroinformatics (24.07.2023)
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Journal Article
A federated learning architecture for secure and private neuroimaging analysis
Stripelis, Dimitris, Gupta, Umang, Saleem, Hamza, Dhinagar, Nikhil, Ghai, Tanmay, Anastasiou, Chrysovalantis, Sánchez, Rafael, Steeg, Greg Ver, Ravi, Srivatsan, Naveed, Muhammad, Thompson, Paul M., Ambite, José Luis
Published in Patterns (New York, N.Y.) (09.08.2024)
Published in Patterns (New York, N.Y.) (09.08.2024)
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Journal Article
A phenome-wide association study (PheWAS) in the Population Architecture using Genomics and Epidemiology (PAGE) study reveals potential pleiotropy in African Americans
Pendergrass, Sarah A, Buyske, Steven, Jeff, Janina M, Frase, Alex, Dudek, Scott, Bradford, Yuki, Ambite, Jose-Luis, Avery, Christy L, Buzkova, Petra, Deelman, Ewa, Fesinmeyer, Megan D, Haiman, Christopher, Heiss, Gerardo, Hindorff, Lucia A, Hsu, Chun-Nan, Jackson, Rebecca D, Lin, Yi, Le Marchand, Loic, Matise, Tara C, Monroe, Kristine R, Moreland, Larry, North, Kari E, Park, Sungshim L, Reiner, Alex, Wallace, Robert, Wilkens, Lynne R, Kooperberg, Charles, Ritchie, Marylyn D, Crawford, Dana C
Published in PloS one (31.12.2019)
Published in PloS one (31.12.2019)
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Journal Article
Democratizing data science through data science training
Van Horn, John Darrell, Fierro, Lily, Kamdar, Jeana, Gordon, Jonathan, Stewart, Crystal, Bhattrai, Avnish, Abe, Sumiko, Lei, Xiaoxiao, O'Driscoll, Caroline, Sinha, Aakanchha, Jain, Priyambada, Burns, Gully, Lerman, Kristina, Ambite, José Luis
Published in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2018)
Published in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2018)
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Journal Article
Selecting Clustering Algorithms for Identity-By-Descent Mapping
Shemirani, Ruhollah, Belbin, Gillian M, Burghardt, Keith, Lerman, Kristina, Avery, Christy L, Kenny, Eimear E, Gignoux, Christopher R, Ambite, José Luis
Published in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2023)
Published in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2023)
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Journal Article
BD2K Training Coordinating Center's ERuDIte: The Educational Resource Discovery Index for Data Science
Ambite, Jose Luis, Fierro, Lily, Gordon, Jonathan, Burns, Gully A. P. C., Geigl, Florian, Lerman, Kristina, Van Horn, John D.
Published in IEEE transactions on emerging topics in computing (01.01.2021)
Published in IEEE transactions on emerging topics in computing (01.01.2021)
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Journal Article
Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study
Lin, Bridget M, Nadkarni, Girish N, Tao, Ran, Graff, Mariaelisa, Fornage, Myriam, Buyske, Steven, Matise, Tara C, Highland, Heather M, Wilkens, Lynne R, Carlson, Christopher S, Park, S Lani, Setiawan, V Wendy, Ambite, Jose Luis, Heiss, Gerardo, Boerwinkle, Eric, Lin, Dan-Yu, Morris, Andrew P, Loos, Ruth J F, Kooperberg, Charles, North, Kari E, Wassel, Christina L, Franceschini, Nora
Published in Frontiers in genetics (24.05.2019)
Published in Frontiers in genetics (24.05.2019)
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Journal Article