Biophysical Analysis of Potential Inhibitors of SARS-CoV‑2 Cell Recognition and Their Effect on Viral Dynamics in Different Cell Types: A Computational Prediction from In Vitro Experimental Data
González-Paz, Lenin, Lossada, Carla, Hurtado-León, María Laura, Vera-Villalobos, Joan, Paz, José L., Marrero-Ponce, Yovani, Martinez-Rios, Felix, Alvarado, Ysaías. J.
Published in ACS omega (27.02.2024)
Published in ACS omega (27.02.2024)
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Journal Article
Macromolecular crowding impact on anti-CRISPR AcrIIC3/NmeCas9 complex: Insights from scaled particle theory, molecular dynamics, and elastic networks models
Delgado, Ariana, Vera-Villalobos, Joan, Paz, José Luis, Lossada, Carla, Hurtado-León, María Laura, Marrero-Ponce, Yovani, Toro-Mendoza, Jhoan, Alvarado, Ysaías J., González-Paz, Lenin
Published in International journal of biological macromolecules (31.07.2023)
Published in International journal of biological macromolecules (31.07.2023)
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Journal Article
Surface Behavior of BSA/Water/Carbohydrate Systems from Molecular Polarizability Measurements
Alvarado, Ysaías J, Ferrebuz, Atilio, Paz, Jose Luis, Rodríguez-Lugo, Patricia, Restrepo, Jelem, Romero, Freddy, Fernández-Acuña, Jaqueline, Williams, Yhan O’Neil, Toro-Mendoza, Jhoan
Published in The journal of physical chemistry. B (19.04.2018)
Published in The journal of physical chemistry. B (19.04.2018)
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Journal Article
Theoretical Study of Cyanidin-Resveratrol Copigmentation by the Functional Density Theory
Chávez, Breyson Yaranga, Paz, José L, Gonzalez-Paz, Lenin A, Alvarado, Ysaias J, Contreras, Julio Santiago, Loroño-González, Marcos A
Published in Molecules (Basel, Switzerland) (01.05.2024)
Published in Molecules (Basel, Switzerland) (01.05.2024)
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Journal Article
Novel 3D bio-macromolecular bilinear descriptors for protein science: Predicting protein structural classes
Marrero-Ponce, Yovani, Contreras-Torres, Ernesto, García-Jacas, César R, Barigye, Stephen J, Cubillán, Néstor, Alvarado, Ysaías J
Published in Journal of theoretical biology (07.06.2015)
Published in Journal of theoretical biology (07.06.2015)
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Journal Article
Comparative Analysis of CRISPR-Cas Systems in Pseudomonas Genomes
Parra-Sánchez, Ángel, Antequera-Zambrano, Laura, Martínez-Navarrete, Gema, Zorrilla-Muñoz, Vanessa, Paz, José Luis, Alvarado, Ysaias J, González-Paz, Lenin, Fernández, Eduardo
Published in Genes (25.06.2023)
Published in Genes (25.06.2023)
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Journal Article
A kinetic model for the equilibrium dynamics of absorption and scattering processes in four-wave mixing spectroscopy
Paz, Jose Luis, Loroño, Marcos, Torres, F. Javier, González-Paz, Lenin A., Marquez, Edgar, Mora, José R., Alvarado, Ysaias J., Mujica, Vladimiro
Published in AIP advances (01.06.2022)
Published in AIP advances (01.06.2022)
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Journal Article
Intrinsic Dynamics of the ClpXP Proteolytic Machine Using Elastic Network Models
González-Paz, Lenin, Lossada, Carla, Hurtado-León, Maria Laura, Fernández-Materán, Francelys V, Paz, José Luis, Parvizi, Shayan, Cardenas Castillo, Rafael Eduardo, Romero, Freddy, Alvarado, Ysaias J
Published in ACS omega (28.02.2023)
Published in ACS omega (28.02.2023)
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Journal Article
Three levels of propagation of the Four-wave mixing signal
Paz, J.L., Alvarado, Ysaias J, Lascano, Luis, Costa-Vera, Cesar
Published in Results in physics (01.12.2018)
Published in Results in physics (01.12.2018)
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Journal Article
Stochastic Nature and Intramolecular Coupling in Optical Response Profiles: Critical Analysis through Semiclassical Models
Paz, José Luis, Loroño, Marcos A., González-Paz, Lenin A., Márquez, Edgar, Mora, José R., Alvarado, Ysaias J.
Published in ACS omega (28.03.2023)
Published in ACS omega (28.03.2023)
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Journal Article
Propagation and Parametric Amplification in Four-Wave Mixing Processes: Intramolecular Coupling and High-Order Effects
Paz, José Luis, Espinoza-Montero, Patricio J., Loroño, Marcos, Torres, Fernando Javier, González-Paz, Lenin, Márquez, Edgar, Vera-Villalobos, Joan, Mora, José R., Moncada, Fernando, Alvarado, Ysaias J.
Published in Symmetry (Basel) (01.02.2022)
Published in Symmetry (Basel) (01.02.2022)
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Journal Article
Preferential solvation of thiophene and furan-2-carboxaldehyde phenylhydrazone derivatives in DMSO–water and DMSO–n-octanol mixtures
Alvarado, Ysaías J., Ballestas-Barrientos, Alfonso, Cubillán, Néstor, Morales-Toyo, Miguel, Restrepo, Jelem, Ferrer-Amado, Gladys
Published in Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy (15.02.2013)
Published in Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy (15.02.2013)
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Journal Article
Volume-related properties of thiophene and furan-2-carboxaldehyde phenylhydrazone derivatives in DMSO: A discussion about non-intrinsic contribution
Alvarado, Ysaías J., Ballestas-Barrientos, Alfonso, Restrepo, Jelem, Vera-Villalobos, Joan, Ferrer-Amado, Gladys, Rodríguez-Lugo, Patricia, Ferrebuz, Atilio, Infante, Miguel, Cubillán, Néstor
Published in The Journal of chemical thermodynamics (01.06.2015)
Published in The Journal of chemical thermodynamics (01.06.2015)
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Journal Article
Hydrogen-bond-assisted topochemical synthesis of a multivalent zwitterionic tetramer via concomitant cross- and homo [2+2] photocycloadditions. Theoretical antiviral activity against SARS-CoV-2
Escalona, Ana, Heinemann, Frank W., Briceño, Alexander, Alvarado, Ysaias J., Paz, José Luis, Lossada, Carla, González-Paz, Lenin, Toro, Robert, Henao, José Antonio
Published in New journal of chemistry (06.11.2023)
Published in New journal of chemistry (06.11.2023)
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Journal Article
Comparative study of the interaction of ivermectin with proteins of interest associated with SARS-CoV-2: A computational and biophysical approach
González-Paz, Lenin, Hurtado-León, María Laura, Lossada, Carla, Fernández-Materán, Francelys V., Vera-Villalobos, Joan, Loroño, Marcos, Paz, J.L., Jeffreys, Laura, Alvarado, Ysaias J.
Published in Biophysical chemistry (01.11.2021)
Published in Biophysical chemistry (01.11.2021)
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Journal Article
Analyzing coherent and incoherent optical susceptibilities in four-wave mixing: stochasticity, symmetry, and intramolecular coupling
Paz, José L., Davila, Cristhian, Loroño, Marcos A., González-Paz, Lenin, Márquez, Edgar, Mora, José R., Alvarado, Ysaias J.
Published in Results in physics (01.06.2024)
Published in Results in physics (01.06.2024)
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Journal Article
Comparative study of SARS-CoV-2 infection in different cell types: Biophysical-computational approach to the role of potential receptors
González-Paz, Lenin, Alvarado, María José, Hurtado-León, María Laura, Lossada, Carla, Vera-Villalobos, Joan, Loroño, Marcos, Paz, J.L., Jeffreys, Laura N., Torres, F. Javier, Alvarado, Ysaias J.
Published in Computers in biology and medicine (01.03.2022)
Published in Computers in biology and medicine (01.03.2022)
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Journal Article
Structural deformability induced in proteins of potential interest associated with COVID-19 by binding of homologues present in ivermectin: Comparative study based in elastic networks models
González-Paz, Lenin, Hurtado-León, María Laura, Lossada, Carla, Fernández-Materán, Francelys V., Vera-Villalobos, Joan, Loroño, Marcos, Paz, J.L., Jeffreys, Laura, Alvarado, Ysaias J.
Published in Journal of molecular liquids (15.10.2021)
Published in Journal of molecular liquids (15.10.2021)
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Journal Article
Thermodynamics of Solution, Interaction with Calf Thymus DNA and Anticancer Activity of Phenylhydrazone Derivatives
Alvarado, Ysaías J., Baricelli, Joanna, Caldera-Luzardo, José, Cubillán, Néstor, Ferrer-Amado, Gladys, Marrero-Ponce, Yovani, Mancilla, Victoria, Rocafull, Miguel A., Ojeda-Andara, José, Thomas, Luz E., Vera-Villalobos, Joan, Morales-Toyo, Miguel
Published in Journal of solution chemistry (01.01.2011)
Published in Journal of solution chemistry (01.01.2011)
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Journal Article
Solvent randomness and intramolecular considerations of optical responses in four-wave mixing
Paz, J. L., Espinoza-Montero, Patricio, Loroño, Marcos, González-Paz, Lenin A., Marquez, Edgar, Vera-Villalobos, Joan, Mora, José R., Alvarado, Ysaias J.
Published in Journal of modern optics (28.11.2021)
Published in Journal of modern optics (28.11.2021)
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Journal Article