BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing
Alpern, Daniel, Gardeux, Vincent, Russeil, Julie, Mangeat, Bastien, Meireles-Filho, Antonio C A, Breysse, Romane, Hacker, David, Deplancke, Bart
Published in Genome Biology (19.04.2019)
Published in Genome Biology (19.04.2019)
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Journal Article
Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium
V'kovski, Philip, Gultom, Mitra, Kelly, Jenna N, Steiner, Silvio, Russeil, Julie, Mangeat, Bastien, Cora, Elisa, Pezoldt, Joern, Holwerda, Melle, Kratzel, Annika, Laloli, Laura, Wider, Manon, Portmann, Jasmine, Tran, Thao, Ebert, Nadine, Stalder, Hanspeter, Hartmann, Rune, Gardeux, Vincent, Alpern, Daniel, Deplancke, Bart, Thiel, Volker, Dijkman, Ronald
Published in PLoS biology (29.03.2021)
Published in PLoS biology (29.03.2021)
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Journal Article
Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress
Weger, Meltem, Alpern, Daniel, Cherix, Antoine, Ghosal, Sriparna, Grosse, Jocelyn, Russeil, Julie, Gruetter, Rolf, de Kloet, E. Ronald, Deplancke, Bart, Sandi, Carmen
Published in Scientific reports (27.10.2020)
Published in Scientific reports (27.10.2020)
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Journal Article
The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression
Kaya-Çopur, Aynur, Marchiano, Fabio, Hein, Marco Y, Alpern, Daniel, Russeil, Julie, Luis, Nuno Miguel, Mann, Matthias, Deplancke, Bart, Habermann, Bianca H, Schnorrer, Frank
Published in eLife (06.01.2021)
Published in eLife (06.01.2021)
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Journal Article
A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation
Llimos, Gerard, Gardeux, Vincent, Koch, Ute, Kribelbauer, Judith F., Hafner, Antonina, Alpern, Daniel, Pezoldt, Joern, Litovchenko, Maria, Russeil, Julie, Dainese, Riccardo, Moia, Riccardo, Mahmoud, Abdurraouf Mokhtar, Rossi, Davide, Gaidano, Gianluca, Plass, Christoph, Lutsik, Pavlo, Gerhauser, Clarissa, Waszak, Sebastian M., Boettiger, Alistair, Radtke, Freddy, Deplancke, Bart
Published in Nature communications (19.04.2022)
Published in Nature communications (19.04.2022)
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Journal Article
Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation
Langer, Diana, Martianov, Igor, Alpern, Daniel, Rhinn, Muriel, Keime, Céline, Dollé, Pascal, Mengus, Gabrielle, Davidson, Irwin
Published in Nature communications (30.03.2016)
Published in Nature communications (30.03.2016)
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Journal Article
Dissecting the brown adipogenic regulatory network using integrative genomics
Pradhan, Rachana N., Bues, Johannes J., Gardeux, Vincent, Schwalie, Petra C., Alpern, Daniel, Chen, Wanze, Russeil, Julie, Raghav, Sunil K., Deplancke, Bart
Published in Scientific reports (09.02.2017)
Published in Scientific reports (09.02.2017)
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Journal Article
Shared acute phase traits in effector and memory human CD8 T cells
Fuertes Marraco, Silvia A., Alpern, Daniel, Lofek, Sébastien, Lourenco, Joao, Bovay, Amandine, Maby-El Hajjami, Hélène, Delorenzi, Mauro, Deplancke, Bart, Speiser, Daniel E.
Published in Current research in immunology (01.01.2022)
Published in Current research in immunology (01.01.2022)
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Journal Article
A stromal cell population that inhibits adipogenesis in mammalian fat depots
Schwalie, Petra C., Dong, Hua, Zachara, Magda, Russeil, Julie, Alpern, Daniel, Akchiche, Nassila, Caprara, Christian, Sun, Wenfei, Schlaudraff, Kai-Uwe, Soldati, Gianni, Wolfrum, Christian, Deplancke, Bart
Published in Nature (London) (01.07.2018)
Published in Nature (London) (01.07.2018)
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Journal Article
Mammalian adipogenesis regulator (Areg) cells use retinoic acid signalling to be non‐ and anti‐adipogenic in age‐dependent manner
Zachara, Magda, Rainer, Pernille Y, Hashimi, Horia, Russeil, Julie M, Alpern, Daniel, Ferrero, Radiana, Litovchenko, Maria, Deplancke, Bart
Published in The EMBO journal (15.09.2022)
Published in The EMBO journal (15.09.2022)
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Journal Article
A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors
Dainese, Riccardo, Gardeux, Vincent, Llimos, Gerard, Alpern, Daniel, Jiang, Jia Yuan, Meireles-Filho, Antonio Carlos Alves, Deplancke, Bart
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2020)
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Journal Article
A human omentum-specific mesothelial-like stromal population inhibits adipogenesis through IGFBP2 secretion
Ferrero, Radiana, Rainer, Pernille Yde, Rumpler, Marie, Russeil, Julie, Zachara, Magda, Pezoldt, Joern, van Mierlo, Guido, Gardeux, Vincent, Saelens, Wouter, Alpern, Daniel, Favre, Lucie, Vionnet, Nathalie, Mantziari, Styliani, Zingg, Tobias, Pitteloud, Nelly, Suter, Michel, Matter, Maurice, Schlaudraff, Kai-Uwe, Canto, Carles, Deplancke, Bart
Published in Cell metabolism (02.07.2024)
Published in Cell metabolism (02.07.2024)
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Journal Article
Multi-well plate lid for single-step pooling of 96 samples for high-throughput barcode-based sequencing
Boder-Pasche, Stéphanie, Demir, Mustafa, Heub, Sarah, Garzuel, Manon, Ischer, Réal, Migliozzi, Daniel, Graf, Siegfried, Schmid, Noa, Atakan, H. Baris, Gudkova, Daria, Alpern, Daniel, Dainese, Riccardo, Deplancke, Bart, Weder, Gilles
Published in Biomedical microdevices (01.06.2024)
Published in Biomedical microdevices (01.06.2024)
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Journal Article
SMiLE-seq identifies binding motifs of single and dimeric transcription factors
Isakova, Alina, Groux, Romain, Imbeault, Michael, Rainer, Pernille, Alpern, Daniel, Dainese, Riccardo, Ambrosini, Giovanna, Trono, Didier, Bucher, Philipp, Deplancke, Bart
Published in Nature methods (01.03.2017)
Published in Nature methods (01.03.2017)
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