Alignment-free sequence comparison: benefits, applications, and tools
Zielezinski, Andrzej, Vinga, Susana, Almeida, Jonas, Karlowski, Wojciech M
Published in Genome Biology (03.10.2017)
Published in Genome Biology (03.10.2017)
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Benchmarking of alignment-free sequence comparison methods
Zielezinski, Andrzej, Girgis, Hani Z, Bernard, Guillaume, Leimeister, Chris-Andre, Tang, Kujin, Dencker, Thomas, Lau, Anna Katharina, Röhling, Sophie, Choi, Jae Jin, Waterman, Michael S, Comin, Matteo, Kim, Sung-Hou, Vinga, Susana, Almeida, Jonas S, Chan, Cheong Xin, James, Benjamin T, Sun, Fengzhu, Morgenstern, Burkhard, Karlowski, Wojciech M
Published in Genome Biology (25.07.2019)
Published in Genome Biology (25.07.2019)
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Racial and Ethnic Disparities in Excess Deaths During the COVID-19 Pandemic, March to December 2020
Shiels, Meredith S, Haque, Anika T, Haozous, Emily A, Albert, Paul S, Almeida, Jonas S, García-Closas, Montserrat, Nápoles, Anna M, Pérez-Stable, Eliseo J, Freedman, Neal D, Berrington de González, Amy
Published in Annals of Internal Medicine (01.12.2021)
Published in Annals of Internal Medicine (01.12.2021)
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Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor-Infiltrating Lymphocytes in Invasive Breast Cancer
Le, Han, Gupta, Rajarsi, Hou, Le, Abousamra, Shahira, Fassler, Danielle, Torre-Healy, Luke, Moffitt, Richard A., Kurc, Tahsin, Samaras, Dimitris, Batiste, Rebecca, Zhao, Tianhao, Rao, Arvind, Van Dyke, Alison L., Sharma, Ashish, Bremer, Erich, Almeida, Jonas S., Saltz, Joel
Published in The American journal of pathology (01.07.2020)
Published in The American journal of pathology (01.07.2020)
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The Emergence of Pathomics
Gupta, Rajarsi, Kurc, Tahsin, Sharma, Ashish, Almeida, Jonas S., Saltz, Joel
Published in Current pathobiology reports (15.09.2019)
Published in Current pathobiology reports (15.09.2019)
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Kinomics toolbox-A web platform for analysis and viewing of kinomic peptide array data
Dussaq, Alex M, Kennell, Jr, Timothy, Eustace, Nicholas J, Anderson, Joshua C, Almeida, Jonas S, Willey, Christopher D
Published in PloS one (21.08.2018)
Published in PloS one (21.08.2018)
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Mortality Tracker: the COVID-19 case for real time web APIs as epidemiology commons
Almeida, Jonas S, Shiels, Meredith, Bhawsar, Praphulla, Patel, Bhaumik, Nemeth, Erika, Moffitt, Richard, Closas, Montserrat Garcia, Freedman, Neal, Berrington, Amy
Published in Bioinformatics (04.08.2021)
Published in Bioinformatics (04.08.2021)
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Impact of Population Growth and Aging on Estimates of Excess U.S. Deaths During the COVID-19 Pandemic, March to August 2020
Shiels, Meredith S, Almeida, Jonas S, García-Closas, Montserrat, Albert, Paul S, Freedman, Neal D, de González, Amy Berrington
Published in Annals of Internal Medicine (01.04.2021)
Published in Annals of Internal Medicine (01.04.2021)
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Demystifying artificial intelligence and deep learning in dentistry
RODRIGUES, Jonas Almeida, KROIS, Joachim, SCHWENDICKE, Falk
Published in Brazilian oral research (01.01.2021)
Published in Brazilian oral research (01.01.2021)
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Computational Pathology: A Path Ahead
Louis, David N, Feldman, Michael, Carter, Alexis B, Dighe, Anand S, Pfeifer, John D, Bry, Lynn, Almeida, Jonas S, Saltz, Joel, Braun, Jonathan, Tomaszewski, John E, Gilbertson, John R, Sinard, John H, Gerber, Georg K, Galli, Stephen J, Golden, Jeffrey A, Becich, Michael J
Published in Archives of pathology & laboratory medicine (1976) (01.01.2016)
Published in Archives of pathology & laboratory medicine (1976) (01.01.2016)
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Associations between actigraphy-measured sleep duration, continuity, and timing with mortality in the UK Biobank
Saint-Maurice, Pedro F, Freeman, Joshua R, Russ, Daniel, Almeida, Jonas S, Shams-White, Marissa M, Patel, Shreya, Wolff-Hughes, Dana L, Watts, Eleanor L, Loftfield, Erikka, Hong, Hyokyoung G, Moore, Steven C, Matthews, Charles E
Published in Sleep (New York, N.Y.) (11.03.2024)
Published in Sleep (New York, N.Y.) (11.03.2024)
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A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images
Saltz, Joel, Sharma, Ashish, Iyer, Ganesh, Bremer, Erich, Wang, Feiqiao, Jasniewski, Alina, DiPrima, Tammy, Almeida, Jonas S, Gao, Yi, Zhao, Tianhao, Saltz, Mary, Kurc, Tahsin
Published in Cancer research (Chicago, Ill.) (01.11.2017)
Published in Cancer research (Chicago, Ill.) (01.11.2017)
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Enabling precision medicine via standard communication of HTS provenance, analysis, and results
Alterovitz, Gil, Dean, Dennis, Goble, Carole, Crusoe, Michael R, Soiland-Reyes, Stian, Bell, Amanda, Hayes, Anais, Suresh, Anita, Purkayastha, Anjan, King, Charles H, Taylor, Dan, Johanson, Elaine, Thompson, Elaine E, Donaldson, Eric, Morizono, Hiroki, Tsang, Hsinyi, Vora, Jeet K, Goecks, Jeremy, Yao, Jianchao, Almeida, Jonas S, Keeney, Jonathon, Addepalli, KanakaDurga, Krampis, Konstantinos, Smith, Krista M, Guo, Lydia, Walderhaug, Mark, Schito, Marco, Ezewudo, Matthew, Guimera, Nuria, Walsh, Paul, Kahsay, Robel, Gottipati, Srikanth, Rodwell, Timothy C, Bloom, Toby, Lai, Yuching, Simonyan, Vahan, Mazumder, Raja
Published in PLoS biology (31.12.2018)
Published in PLoS biology (31.12.2018)
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Actigraphy-derived measures of sleep and risk of prostate cancer in the UK Biobank
Freeman, Joshua R, Saint-Maurice, Pedro F, Watts, Eleanor L, Moore, Steven C, Shams-White, Marissa M, Wolff-Hughes, Dana L, Russ, Daniel E, Almeida, Jonas S, Caporaso, Neil E, Hong, Hyokyoung G, Loftfield, Erikka, Matthews, Charles E
Published in JNCI : Journal of the National Cancer Institute (07.03.2024)
Published in JNCI : Journal of the National Cancer Institute (07.03.2024)
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