Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
Duvallet, Claire, Gibbons, Sean M., Gurry, Thomas, Irizarry, Rafael A., Alm, Eric J.
Published in Nature communications (05.12.2017)
Published in Nature communications (05.12.2017)
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Framework for rational donor selection in fecal microbiota transplant clinical trials
Duvallet, Claire, Zellmer, Caroline, Panchal, Pratik, Budree, Shrish, Osman, Majdi, Alm, Eric J
Published in PloS one (10.10.2019)
Published in PloS one (10.10.2019)
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Journal Article
SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases
Wu, Fuqing, Zhang, Jianbo, Xiao, Amy, Gu, Xiaoqiong, Lee, Wei Lin, Armas, Federica, Kauffman, Kathryn, Hanage, William, Matus, Mariana, Ghaeli, Newsha, Endo, Noriko, Duvallet, Claire, Poyet, Mathilde, Moniz, Katya, Washburne, Alex D., Erickson, Timothy B., Chai, Peter R., Thompson, Janelle, Alm, Eric J.
Published in mSystems (25.08.2020)
Published in mSystems (25.08.2020)
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Journal Article
Host lifestyle affects human microbiota on daily timescales
David, Lawrence A, Materna, Arne C, Friedman, Jonathan, Campos-Baptista, Maria I, Blackburn, Matthew C, Perrotta, Allison, Erdman, Susan E, Alm, Eric J
Published in Genome biology (01.01.2014)
Published in Genome biology (01.01.2014)
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A practical guide to methods controlling false discoveries in computational biology
Korthauer, Keegan, Kimes, Patrick K, Duvallet, Claire, Reyes, Alejandro, Subramanian, Ayshwarya, Teng, Mingxiang, Shukla, Chinmay, Alm, Eric J, Hicks, Stephanie C
Published in Genome Biology (04.06.2019)
Published in Genome Biology (04.06.2019)
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Journal Article
Salt-responsive gut commensal modulates TH17 axis and disease
Wilck, Nicola, Matus, Mariana G., Kearney, Sean M., Olesen, Scott W., Forslund, Kristoffer, Bartolomaeus, Hendrik, Haase, Stefanie, Mähler, Anja, Balogh, András, Markó, Lajos, Vvedenskaya, Olga, Kleiner, Friedrich H., Tsvetkov, Dmitry, Klug, Lars, Costea, Paul I., Sunagawa, Shinichi, Maier, Lisa, Rakova, Natalia, Schatz, Valentin, Neubert, Patrick, Frätzer, Christian, Krannich, Alexander, Gollasch, Maik, Grohme, Diana A., Côrte-Real, Beatriz F., Gerlach, Roman G., Basic, Marijana, Typas, Athanasios, Wu, Chuan, Titze, Jens M., Jantsch, Jonathan, Boschmann, Michael, Dechend, Ralf, Kleinewietfeld, Markus, Kempa, Stefan, Bork, Peer, Linker, Ralf A., Alm, Eric J., Müller, Dominik N.
Published in Nature (London) (30.11.2017)
Published in Nature (London) (30.11.2017)
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Microbial symbionts accelerate wound healing via the neuropeptide hormone oxytocin
Poutahidis, Theofilos, Kearney, Sean M, Levkovich, Tatiana, Qi, Peimin, Varian, Bernard J, Lakritz, Jessica R, Ibrahim, Yassin M, Chatzigiagkos, Antonis, Alm, Eric J, Erdman, Susan E
Published in PloS one (30.10.2013)
Published in PloS one (30.10.2013)
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Journal Article
Profiling Living Bacteria Informs Preparation of Fecal Microbiota Transplantations
Chu, Nathaniel D, Smith, Mark B, Perrotta, Allison R, Kassam, Zain, Alm, Eric J
Published in PloS one (26.01.2017)
Published in PloS one (26.01.2017)
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Journal Article
An omics-based framework for assessing the health risk of antimicrobial resistance genes
Zhang, An-Ni, Gaston, Jeffry M., Dai, Chengzhen L., Zhao, Shijie, Poyet, Mathilde, Groussin, Mathieu, Yin, Xiaole, Li, Li-Guan, van Loosdrecht, Mark C. M., Topp, Edward, Gillings, Michael R., Hanage, William P., Tiedje, James M., Moniz, Katya, Alm, Eric J., Zhang, Tong
Published in Nature communications (06.08.2021)
Published in Nature communications (06.08.2021)
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Journal Article
Population Genomics of Early Events in the Ecological Differentiation of Bacteria
Shapiro, B. Jesse, Friedman, Jonathan, Cordero, Otto X., Preheim, Sarah P., Timberlake, Sonia C., Szabó, Gitta, Polz, Martin F., J. Alm, Eric
Published in Science (American Association for the Advancement of Science) (06.04.2012)
Published in Science (American Association for the Advancement of Science) (06.04.2012)
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