Metagenomic analysis of human diarrhea: viral detection and discovery
Finkbeiner, Stacy R, Allred, Adam F, Tarr, Phillip I, Klein, Eileen J, Kirkwood, Carl D, Wang, David
Published in PLoS pathogens (29.02.2008)
Published in PLoS pathogens (29.02.2008)
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Targeted Next-Generation Sequencing Assay for Direct Detection and Serotyping of Salmonella from Enrichment
Lin, Andrew, Singh, Atul, Allred, Adam, Allard, Marc, Waltman, Doug, Imanian, Behzad, Ng, Justin H.J., Sanahmadi, Yadollah, Khaksar, Ramin
Published in Journal of food protection (01.04.2024)
Published in Journal of food protection (01.04.2024)
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Listeria floridensis sp. nov., Listeria aquatica sp. nov., Listeria cornellensis sp. nov., Listeria riparia sp. nov. and Listeria grandensis sp. nov., from agricultural and natural environments
den Bakker, Henk C, Warchocki, Steven, Wright, Emily M, Allred, Adam F, Ahlstrom, Christina, Manuel, Clyde S, Stasiewicz, Matthew J, Burrell, Angela, Roof, Sherry, Strawn, Laura K, Fortes, Esther, Nightingale, Kendra K, Kephart, Daniel, Wiedmann, Martin
Published in International journal of systematic and evolutionary microbiology (01.06.2014)
Published in International journal of systematic and evolutionary microbiology (01.06.2014)
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The Next Frontier in Tuberculosis Investigation: Automated Whole Genome Sequencing for Mycobacterium tuberculosis Analysis
Ng, Justin H. J, Castro, Lina, Gorzalski, Andrew, Allred, Adam, Siao, Danielle, Wong, Edwina, Lin, Andrew, Shokralla, Shadi, Pandori, Mark, Masinde, Godfred, Khaksar, Ramin
Published in International journal of molecular sciences (01.07.2024)
Published in International journal of molecular sciences (01.07.2024)
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Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing
DebRoy, Chitrita, Fratamico, Pina M, Yan, Xianghe, Baranzoni, GianMarco, Liu, Yanhong, Needleman, David S, Tebbs, Robert, O'Connell, Catherine D, Allred, Adam, Swimley, Michelle, Mwangi, Michael, Kapur, Vivek, Raygoza Garay, Juan A, Roberts, Elisabeth L, Katani, Robab
Published in PloS one (29.01.2016)
Published in PloS one (29.01.2016)
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A Targeted Sequencing Assay for Serotyping Escherichia coli Using AgriSeq Technology
Elder, Jacob R, Fratamico, Pina M, Liu, Yanhong, Needleman, David S, Bagi, Lori, Tebbs, Robert, Allred, Adam, Siddavatam, Prasad, Suren, Haktan, Gujjula, Krishna Reddy, DebRoy, Chitrita, Dudley, Edward G, Yan, Xianghe
Published in Frontiers in microbiology (15.01.2021)
Published in Frontiers in microbiology (15.01.2021)
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VIPR HMM: a hidden Markov model for detecting recombination with microbial detection microarrays
ALLRED, Adam F, RENSHAW, Hilary, WEAVER, Scott, TESH, Robert B, WANG, David
Published in Bioinformatics (15.11.2012)
Published in Bioinformatics (15.11.2012)
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Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing
Gardner, Shea N, Frey, Kenneth G, Redden, Cassie L, Thissen, James B, Allen, Jonathan E, Allred, Adam F, Dyer, Matthew D, Mokashi, Vishwesh P, Slezak, Tom R
Published in BMC research notes (16.11.2015)
Published in BMC research notes (16.11.2015)
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VIPR: A probabilistic algorithm for analysis of microbial detection microarrays
Allred, Adam F, Wu, Guang, Wulan, Tuya, Fischer, Kael F, Holbrook, Michael R, Tesh, Robert B, Wang, David
Published in BMC bioinformatics (20.07.2010)
Published in BMC bioinformatics (20.07.2010)
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Correction: Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing
DebRoy, Chitrita, Fratamico, Pina M, Yan, Xianghe, Baranzoni, GianMarco, Liu, Yanhong, Needleman, David S, Tebbs, Robert, O'Connell, Catherine D, Allred, Adam, Swimley, Michelle, Mwangi, Michael, Kapur, Vivek, Garay, Juan A Raygoza, Roberts, Elisabeth L, Katani, Robab
Published in PloS one (27.04.2016)
Published in PloS one (27.04.2016)
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Comparison of O-Antigen Gene Clusters of All O-Serogroups of Escherichia coli and Proposal for Adopting a New Nomenclature for O-Typing: e0147434
DebRoy, Chitrita, Fratamico, Pina M, Yan, Xianghe, Baranzoni, GianMarco, Liu, Yanhong, Needleman, David S, Tebbs, Robert, Allred, Adam, Swimley, Michelle, Mwangi, Michael
Published in PloS one (01.01.2016)
Published in PloS one (01.01.2016)
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Metagenomic Analysis of Human Diarrhea: Viral Detection and Discovery: e1000011
Finkbeiner, Stacy R, Allred, Adam F, Tarr, Phillip I, Klein, Eileen J, Kirkwood, Carl D, Wang, David
Published in PLoS pathogens (01.02.2008)
Published in PLoS pathogens (01.02.2008)
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