Improved Protein–Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference
Jones, Derek, Kim, Hyojin, Zhang, Xiaohua, Zemla, Adam, Stevenson, Garrett, Bennett, W. F. Drew, Kirshner, Daniel, Wong, Sergio E, Lightstone, Felice C, Allen, Jonathan E
Published in Journal of chemical information and modeling (26.04.2021)
Published in Journal of chemical information and modeling (26.04.2021)
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Binding Affinity Prediction by Pairwise Function Based on Neural Network
Zhu, Fangqiang, Zhang, Xiaohua, Allen, Jonathan E, Jones, Derek, Lightstone, Felice C
Published in Journal of chemical information and modeling (22.06.2020)
Published in Journal of chemical information and modeling (22.06.2020)
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Predicting tumor cell line response to drug pairs with deep learning
Xia, Fangfang, Shukla, Maulik, Brettin, Thomas, Garcia-Cardona, Cristina, Cohn, Judith, Allen, Jonathan E, Maslov, Sergei, Holbeck, Susan L, Doroshow, James H, Evrard, Yvonne A, Stahlberg, Eric A, Stevens, Rick L
Published in BMC bioinformatics (21.12.2018)
Published in BMC bioinformatics (21.12.2018)
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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Haas, Brian J, Salzberg, Steven L, Zhu, Wei, Pertea, Mihaela, Allen, Jonathan E, Orvis, Joshua, White, Owen, Buell, C Robin, Wortman, Jennifer R
Published in Genome biology (11.01.2008)
Published in Genome biology (11.01.2008)
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3D-printed polyacrylamide-based hydrogel polymer electrolytes for flexible zinc-ion battery
Poompiew, Nutthapong, Jirawatanaporn, Nantachporn, Okhawilai, Manunya, Qin, Jiaqian, Román, Allen Jonathan, Aumnate, Chuanchom, Osswald, Tim A., Potiyaraj, Pranut
Published in Electrochimica acta (20.10.2023)
Published in Electrochimica acta (20.10.2023)
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Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies
Avila-Herrera, Aram, Kimbrel, Jeffrey A, Manuel Martí, Jose, Thissen, James, Saada, Edwin A, Weisenberger, Tracy, Arrildt, Kathryn T, Segelke, Brent W, Allen, Jonathan E, Zemla, Adam, Borucki, Monica K
Published in PloS one (25.01.2024)
Published in PloS one (25.01.2024)
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AMPL: A Data-Driven Modeling Pipeline for Drug Discovery
Minnich, Amanda J, McLoughlin, Kevin, Tse, Margaret, Deng, Jason, Weber, Andrew, Murad, Neha, Madej, Benjamin D, Ramsundar, Bharath, Rush, Tom, Calad-Thomson, Stacie, Brase, Jim, Allen, Jonathan E
Published in Journal of chemical information and modeling (27.04.2020)
Published in Journal of chemical information and modeling (27.04.2020)
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Effect of Fiber Bundle Morphology on Fiber Dispersion for Long Fiber-Reinforced Thermoplastics
Perez, Hector Sebastian, Román, Allen Jonathan, Bechara Senior, Abrahán, Osswald, Tim
Published in Polymers (23.06.2023)
Published in Polymers (23.06.2023)
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Systemic infection facilitates transmission of Pseudomonas aeruginosa in mice
Bachta, Kelly E. R., Allen, Jonathan P., Cheung, Bettina H., Chiu, Cheng-Hsun, Hauser, Alan R.
Published in Nature communications (28.01.2020)
Published in Nature communications (28.01.2020)
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FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science
Sichtig, Heike, Minogue, Timothy, Yan, Yi, Stefan, Christopher, Hall, Adrienne, Tallon, Luke, Sadzewicz, Lisa, Nadendla, Suvarna, Klimke, William, Hatcher, Eneida, Shumway, Martin, Aldea, Dayanara Lebron, Allen, Jonathan, Koehler, Jeffrey, Slezak, Tom, Lovell, Stephen, Schoepp, Randal, Scherf, Uwe
Published in Nature communications (25.07.2019)
Published in Nature communications (25.07.2019)
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Scalable metagenomic taxonomy classification using a reference genome database
Ames, Sasha K, Hysom, David A, Gardner, Shea N, Lloyd, G Scott, Gokhale, Maya B, Allen, Jonathan E
Published in Bioinformatics (15.09.2013)
Published in Bioinformatics (15.09.2013)
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