Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Gerdol, Marco, Moreira, Rebeca, Cruz, Fernando, Gómez-Garrido, Jessica, Vlasova, Anna, Rosani, Umberto, Venier, Paola, Naranjo-Ortiz, Miguel A, Murgarella, Maria, Greco, Samuele, Balseiro, Pablo, Corvelo, André, Frias, Leonor, Gut, Marta, Gabaldón, Toni, Pallavicini, Alberto, Canchaya, Carlos, Novoa, Beatriz, Alioto, Tyler S, Posada, David, Figueras, Antonio
Published in Genome Biology (10.11.2020)
Published in Genome Biology (10.11.2020)
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Journal Article
Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.)
Julca, Irene, Marcet-Houben, Marina, Cruz, Fernando, Gómez-Garrido, Jèssica, Gaut, Brandon S, Díez, Concepción M, Gut, Ivo G, Alioto, Tyler S, Vargas, Pablo, Gabaldón, Toni
Published in BMC biology (26.10.2020)
Published in BMC biology (26.10.2020)
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Journal Article
Genome sequence of the olive tree, Olea europaea
Cruz, Fernando, Julca, Irene, Gómez-Garrido, Jèssica, Loska, Damian, Marcet-Houben, Marina, Cano, Emilio, Galán, Beatriz, Frias, Leonor, Ribeca, Paolo, Derdak, Sophia, Gut, Marta, Sánchez-Fernández, Manuel, García, Jose Luis, Gut, Ivo G, Vargas, Pablo, Alioto, Tyler S, Gabaldón, Toni
Published in Gigascience (27.06.2016)
Published in Gigascience (27.06.2016)
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Journal Article
Using geneid to Identify Genes
Alioto, Tyler, Blanco, Enrique, Parra, Genís, Guigó, Roderic
Published in Current protocols in bioinformatics (01.12.2018)
Published in Current protocols in bioinformatics (01.12.2018)
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Journal Article
Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish
Guerrero-Cózar, Israel, Gomez-Garrido, Jessica, Berbel, Concha, Martinez-Blanch, Juan F., Alioto, Tyler, Claros, M. Gonzalo, Gagnaire, Pierre-Alexandre, Manchado, Manuel
Published in Scientific reports (29.06.2021)
Published in Scientific reports (29.06.2021)
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Journal Article
Chromosome-level assembly and annotation of the Xyrichtys novacula (Linnaeus, 1758) genome
Cruz, Fernando, Gómez-Garrido, Jèssica, Gut, Marta, Alioto, Tyler S, Pons, Joan, Alós, Josep, Barcelo-Serra, Margarida
Published in DNA research (01.10.2023)
Published in DNA research (01.10.2023)
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Journal Article
Chromosome-level genome assembly of Lilford’s wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain)
Gomez-Garrido, Jessica, Cruz, Fernando, Alioto, Tyler S, Feiner, Nathalie, Uller, Tobias, Gut, Marta, Sanchez Escudero, Ignacio, Tavecchia, Giacomo, Rotger, Andreu, Otalora Acevedo, Katherin Eliana, Baldo, Laura
Published in DNA research (01.06.2023)
Published in DNA research (01.06.2023)
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Journal Article
Selective single molecule sequencing and assembly of a human Y chromosome of African origin
Kuderna, Lukas F. K., Lizano, Esther, Julià, Eva, Gomez-Garrido, Jessica, Serres-Armero, Aitor, Kuhlwilm, Martin, Alandes, Regina Antoni, Alvarez-Estape, Marina, Juan, David, Simon, Heath, Alioto, Tyler, Gut, Marta, Gut, Ivo, Schierup, Mikkel Heide, Fornas, Oscar, Marques-Bonet, Tomas
Published in Nature communications (02.01.2019)
Published in Nature communications (02.01.2019)
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Journal Article
Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha
Julca, Irene, Marcet-Houben, Marina, Cruz, Fernando, Vargas-Chavez, Carlos, Johnston, John Spencer, Gómez-Garrido, Jèssica, Frias, Leonor, Corvelo, André, Loska, Damian, Cámara, Francisco, Gut, Marta, Alioto, Tyler, Latorre, Amparo, Gabaldón, Toni
Published in Molecular biology and evolution (01.03.2020)
Published in Molecular biology and evolution (01.03.2020)
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Journal Article
Developmental RNA-Seq transcriptomics of haploid germ cells and spermatozoa uncovers novel pathways associated with teleost spermiogenesis
Castro-Arnau, Júlia, Chauvigné, François, Gómez-Garrido, Jessica, Esteve-Codina, Anna, Dabad, Marc, Alioto, Tyler, Finn, Roderick Nigel, Cerdà, Joan
Published in Scientific reports (19.08.2022)
Published in Scientific reports (19.08.2022)
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Journal Article
A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797)
Destanović, Dalila, Schultz, Darrin T, Styfhals, Ruth, Cruz, Fernando, Gómez-Garrido, Jèssica, Gut, Marta, Gut, Ivo, Fiorito, Graziano, Simakov, Oleg, Alioto, Tyler S, Ponte, Giovanna, Seuntjens, Eve
Published in G3 : genes - genomes - genetics (06.12.2023)
Published in G3 : genes - genomes - genetics (06.12.2023)
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Journal Article
Emergence of 16S rRNA methyltransferases among carbapenemase-producing Enterobacterales in Spain studied by whole-genome sequencing
Arca-Suárez, Jorge, Rodiño-Janeiro, Bruno K., Pérez, Astrid, Guijarro-Sánchez, Paula, Vázquez-Ucha, Juan C., Cruz, Fernando, Gómez-Garrido, Jèssica, Alioto, Tyler S., Álvarez-Tejado, Miguel, Gut, Marta, Gut, Ivo, Oviaño, Marina, Beceiro, Alejandro, Bou, Germán, Merino, Irene, Cercenado, Emilia, Gómez, Rosa, Soler, Tamara, Gracia-Ahufinger, Irene, Martín, Lina, Galán, Fátima, Tormo, Nuria, Rodríguez, Juan Carlos, Capilla, Silvia, Marco, Francesc, Quesada, María Dolores, Padilla, Emma, Tubau, Fe, González, Juanjo, López-Calleja, Ana Isabel, del Pozo, José Luis, García, María Inmaculada, Martinez, Mariela, Calvo, Jorge, Mulet, Xavier, Peña, Fernanda, Rodríguez, Ana Isabel, Gude, María José, Fernández, Ana, Fernández, Javier
Published in International journal of antimicrobial agents (01.01.2022)
Published in International journal of antimicrobial agents (01.01.2022)
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Journal Article
De novo transcriptome sequencing and gene co-expression reveal a genomic basis for drought sensitivity and evidence of a rapid local adaptation on Atlas cedar ( Cedrus atlantica )
Cobo-Simón, Irene, Gómez-Garrido, Jèssica, Esteve-Codina, Anna, Dabad, Marc, Alioto, Tyler, Maloof, Julin N, Méndez-Cea, Belén, Seco, José Ignacio, Linares, Juan Carlos, Gallego, Francisco Javier
Published in Frontiers in plant science (19.04.2023)
Published in Frontiers in plant science (19.04.2023)
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Journal Article
Alteration in the Culex pipiens transcriptome reveals diverse mechanisms of the mosquito immune system implicated upon Rift Valley fever phlebovirus exposure
Núñez, Ana I, Esteve-Codina, Anna, Gómez-Garrido, Jèssica, Brustolin, Marco, Talavera, Sandra, Berdugo, Miguel, Dabad, Marc, Alioto, Tyler, Bensaid, Albert, Busquets, Núria
Published in PLoS neglected tropical diseases (01.12.2020)
Published in PLoS neglected tropical diseases (01.12.2020)
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Journal Article
Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture
Marcet-Houben, Marina, Cruz, Fernando, Gómez-Garrido, Jéssica, Alioto, Tyler S, Nunez-Rodriguez, Juan Carlos, Mesanza, Nebai, Gut, Marta, Iturritxa, Eugenia, Gabaldon, Toni
Published in mSystems (19.03.2024)
Published in mSystems (19.03.2024)
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Journal Article
Atlantic mackerel population structure does not support genetically distinct spawning components
Manuzzi, Alice, Aguirre-Sarabia, Imanol, Díaz-Arce, Natalia, Bekkevold, Dorte, Jansen, Teunis, Gomez-Garrido, Jessica, Alioto, Tyler S, Gut, Marta, Castonguay, Martin, Sanchez-Maroño, Sonia, Álvarez, Paula, Rodriguez-Ezpeleta, Naiara
Published in Open research Europe (2024)
Published in Open research Europe (2024)
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Journal Article