RNA Sequence Context Effects Measured In Vitro Predict In Vivo Protein Binding and Regulation
Taliaferro, J. Matthew, Lambert, Nicole J., Sudmant, Peter H., Dominguez, Daniel, Merkin, Jason J., Alexis, Maria S., Bazile, Cassandra A., Burge, Christopher B.
Published in Molecular cell (20.10.2016)
Published in Molecular cell (20.10.2016)
Get full text
Journal Article
Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints
Irimia, Manuel, Tena, Juan J, Alexis, Maria S, Fernandez-Miñan, Ana, Maeso, Ignacio, Bogdanovic, Ozren, de la Calle-Mustienes, Elisa, Roy, Scott W, Gómez-Skarmeta, José L, Fraser, Hunter B
Published in Genome research (01.12.2012)
Published in Genome research (01.12.2012)
Get full text
Journal Article
Origins and Impacts of New Mammalian Exons
Merkin, Jason J., Chen, Ping, Alexis, Maria S., Hautaniemi, Sampsa K., Burge, Christopher B.
Published in Cell reports (Cambridge) (31.03.2015)
Published in Cell reports (Cambridge) (31.03.2015)
Get full text
Journal Article
Sequence, Structure, and Context Preferences of Human RNA Binding Proteins
Dominguez, Daniel, Freese, Peter, Alexis, Maria S., Su, Amanda, Hochman, Myles, Palden, Tsultrim, Bazile, Cassandra, Lambert, Nicole J., Van Nostrand, Eric L., Pratt, Gabriel A., Yeo, Gene W., Graveley, Brenton R., Burge, Christopher B.
Published in Molecular cell (07.06.2018)
Published in Molecular cell (07.06.2018)
Get full text
Journal Article
Acidification of Tumor at Stromal Boundaries Drives Transcriptome Alterations Associated with Aggressive Phenotypes
Rohani, Nazanin, Hao, Liangliang, Alexis, Maria S, Joughin, Brian A, Krismer, Konstantin, Moufarrej, Mira N, Soltis, Anthony R, Lauffenburger, Douglas A, Yaffe, Michael B, Burge, Christopher B, Bhatia, Sangeeta N, Gertler, Frank B
Published in Cancer research (Chicago, Ill.) (15.04.2019)
Published in Cancer research (Chicago, Ill.) (15.04.2019)
Get full text
Journal Article
Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro
Harris, Sarah E, Alexis, Maria S, Giri, Gilbert, Cavazos, Francisco F, Murn, Jernej, Aleman, Maria M, Burge, Christopher B, Dominguez, Daniel
Published in bioRxiv (30.01.2024)
Published in bioRxiv (30.01.2024)
Get full text
Journal Article
Paper
Sequence, Structure and Context Preferences of Human RNA Binding Proteins
Dominguez, Daniel, Freese, Peter, Alexis, Maria S, Su, Amanda, Hochman, Myles, Palden, Tsultrim, Bazile, Cassandra, Lambert, Nicole J, Van Nostrand, Eric L, Pratt, Gabriel A, Yeo, Gene W, Graveley, Brenton, Burge, Christopher B
Published in bioRxiv (12.10.2017)
Published in bioRxiv (12.10.2017)
Get full text
Paper