The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains
Alekseyenko, Artyom A, Walsh, Erica M, Wang, Xin, Grayson, Adlai R, Hsi, Peter T, Kharchenko, Peter V, Kuroda, Mitzi I, French, Christopher A
Published in Genes & development (15.07.2015)
Published in Genes & development (15.07.2015)
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genomic binding sites of a noncoding RNA
Simon, Matthew D, Wang, Charlotte I, Kharchenko, Peter V, West, Jason A, Chapman, Brad A, Alekseyenko, Artyom A, Borowsky, Mark L, Kuroda, Mitzi I, Kingston, Robert E
Published in Proceedings of the National Academy of Sciences - PNAS (20.12.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (20.12.2011)
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Ectopic protein interactions within BRD4–chromatin complexes drive oncogenic megadomain formation in NUT midline carcinoma
Alekseyenko, Artyom A., Walsh, Erica M., Zee, Barry M., Pakozdi, Tibor, Hsi, Peter, Lemieux, Madeleine E., Dal Cin, Paola, Ince, Tan A., Kharchenko, Peter V., Kuroda, Mitzi I., French, Christopher A.
Published in Proceedings of the National Academy of Sciences - PNAS (23.05.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (23.05.2017)
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A better way: training for direct observations in healthcare
Alfred, Myrtede, Del Gaizo, John, Kanji, Falisha, Lawton, Samuel, Caron, Ashley, Nemeth, Lynne S, Alekseyenko, A V, Shouhed, Daniel, Savage, Stephen, Anger, Jennifer T, Catchpole, Ken, Cohen, Tara
Published in BMJ quality & safety (01.10.2022)
Published in BMJ quality & safety (01.10.2022)
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Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification
Alekseyenko, Artyom A., Gorchakov, Andrey A., Kharchenko, Peter V., Kuroda, Mitzi I.
Published in Proceedings of the National Academy of Sciences - PNAS (18.02.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (18.02.2014)
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A Sequence Motif within Chromatin Entry Sites Directs MSL Establishment on the Drosophila X Chromosome
Alekseyenko, Artyom A., Peng, Shouyong, Larschan, Erica, Gorchakov, Andrey A., Lee, Ok-Kyung, Kharchenko, Peter, McGrath, Sean D., Wang, Charlotte I., Mardis, Elaine R., Park, Peter J., Kuroda, Mitzi I.
Published in Cell (22.08.2008)
Published in Cell (22.08.2008)
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Nature and function of insulator protein binding sites in the Drosophila genome
Schwartz, Yuri B, Linder-Basso, Daniela, Kharchenko, Peter V, Tolstorukov, Michael Y, Kim, Maria, Li, Hua-Bing, Gorchakov, Andrey A, Minoda, Aki, Shanower, Gregory, Alekseyenko, Artyom A, Riddle, Nicole C, Jung, Youngsook L, Gu, Tingting, Plachetka, Annette, Elgin, Sarah C R, Kuroda, Mitzi I, Park, Peter J, Savitsky, Mikhail, Karpen, Gary H, Pirrotta, Vincenzo
Published in Genome research (01.11.2012)
Published in Genome research (01.11.2012)
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Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
Riddle, Nicole C, Minoda, Aki, Kharchenko, Peter V, Alekseyenko, Artyom A, Schwartz, Yuri B, Tolstorukov, Michael Y, Gorchakov, Andrey A, Jaffe, Jacob D, Kennedy, Cameron, Linder-Basso, Daniela, Peach, Sally E, Shanower, Gregory, Zheng, Haiyan, Kuroda, Mitzi I, Pirrotta, Vincenzo, Park, Peter J, Elgin, Sarah C R, Karpen, Gary H
Published in Genome research (01.02.2011)
Published in Genome research (01.02.2011)
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Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila
Alekseyenko, Artyom A, Ellison, Christopher E, Gorchakov, Andrey A, Zhou, Qi, Kaiser, Vera B, Toda, Nick, Walton, Zaak, Peng, Shouyong, Park, Peter J, Bachtrog, Doris, Kuroda, Mitzi I
Published in Genes & development (15.04.2013)
Published in Genes & development (15.04.2013)
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Chromatin proteins captured by ChIP–mass spectrometry are linked to dosage compensation in Drosophila
Wang, Charlotte I, Alekseyenko, Artyom A, LeRoy, Gary, Elia, Andrew EH, Gorchakov, Andrey A, Britton, Laura-Mae P, Elledge, Stephen J, Kharchenko, Peter V, Garcia, Benjamin A, Kuroda, Mitzi I
Published in Nature structural & molecular biology (01.02.2013)
Published in Nature structural & molecular biology (01.02.2013)
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MSL Complex Is Attracted to Genes Marked by H3K36 Trimethylation Using a Sequence-Independent Mechanism
Larschan, Erica, Alekseyenko, Artyom A., Gortchakov, Andrey A., Peng, Shouyong, Li, Bing, Yang, Pok, Workman, Jerry L., Park, Peter J., Kuroda, Mitzi I.
Published in Molecular cell (12.10.2007)
Published in Molecular cell (12.10.2007)
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Preventing or controlling periodontitis reduces the occurrence of osteonecrosis of the jaw (ONJ) in rice rats (Oryzomys palustris)
Castillo, E.J., Messer, J.G., Abraham, A.M., Jiron, J.M., Alekseyenko, A.V., Israel, R., Thomas, S., Gonzalez-Perez, G.M., Croft, S., Gohel, A., Bhattacharyya, I., Yarrow, J.F., Novince, C.M., Kimmel, D.B., Aguirre, J.I.
Published in Bone (New York, N.Y.) (01.04.2021)
Published in Bone (New York, N.Y.) (01.04.2021)
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Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry
Zee, Barry M., Alekseyenko, Artyom A., McElroy, Kyle A., Kuroda, Mitzi I.
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2016)
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Plasma levels of interleukin-1 receptor antagonist (IL1Ra) predict radiographic progression of symptomatic knee osteoarthritis
Attur, M, Statnikov, A, Samuels, J, Li, Z, Alekseyenko, A.V, Greenberg, J.D, Krasnokutsky, S, Rybak, L, Lu, Q.A, Todd, J, Zhou, H, Jordan, J.M, Kraus, V.B, Aliferis, C.F, Abramson, S.B
Published in Osteoarthritis and cartilage (01.11.2015)
Published in Osteoarthritis and cartilage (01.11.2015)
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Journal Article
The Oncoprotein BRD4-NUT Generates Aberrant Histone Modification Patterns
Zee, Barry M, Dibona, Amy B, Alekseyenko, Artyom A, French, Christopher A, Kuroda, Mitzi I
Published in PloS one (03.10.2016)
Published in PloS one (03.10.2016)
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Tristetraprolin Is Required for Alveolar Bone Homeostasis
Steinkamp, H.M., Hathaway-Schrader, J.D., Chavez, M.B., Aartun, J.D., Zhang, L., Jensen, T., Shojaee Bakhtiari, A., Helke, K.L., Stumpo, D.J., Alekseyenko, A.V., Novince, C.M., Blackshear, P.J., Kirkwood, K.L.
Published in Journal of dental research (01.07.2018)
Published in Journal of dental research (01.07.2018)
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“Jump Start and Gain” Model for Dosage Compensation in Drosophila Based on Direct Sequencing of Nascent Transcripts
Ferrari, Francesco, Plachetka, Annette, Alekseyenko, Artyom A., Jung, Youngsook L., Ozsolak, Fatih, Kharchenko, Peter V., Park, Peter J., Kuroda, Mitzi I.
Published in Cell reports (Cambridge) (14.11.2013)
Published in Cell reports (Cambridge) (14.11.2013)
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Comparative analysis of metazoan chromatin organization
Ho, Joshua W. K., Jung, Youngsook L., Liu, Tao, Alver, Burak H., Lee, Soohyun, Ikegami, Kohta, Sohn, Kyung-Ah, Minoda, Aki, Tolstorukov, Michael Y., Appert, Alex, Parker, Stephen C. J., Gu, Tingting, Kundaje, Anshul, Riddle, Nicole C., Bishop, Eric, Egelhofer, Thea A., Hu, Sheng'en Shawn, Alekseyenko, Artyom A., Rechtsteiner, Andreas, Asker, Dalal, Belsky, Jason A., Bowman, Sarah K., Chen, Q. Brent, Chen, Ron A.-J., Day, Daniel S., Dong, Yan, Dose, Andrea C., Duan, Xikun, Epstein, Charles B., Ercan, Sevinc, Feingold, Elise A., Ferrari, Francesco, Garrigues, Jacob M., Gehlenborg, Nils, Good, Peter J., Haseley, Psalm, He, Daniel, Herrmann, Moritz, Hoffman, Michael M., Jeffers, Tess E., Kharchenko, Peter V., Kolasinska-Zwierz, Paulina, Kotwaliwale, Chitra V., Kumar, Nischay, Langley, Sasha A., Larschan, Erica N., Latorre, Isabel, Libbrecht, Maxwell W., Lin, Xueqiu, Park, Richard, Pazin, Michael J., Pham, Hoang N., Plachetka, Annette, Qin, Bo, Schwartz, Yuri B., Shoresh, Noam, Stempor, Przemyslaw, Vielle, Anne, Wang, Chengyang, Whittle, Christina M., Xue, Huiling, Kingston, Robert E., Kim, Ju Han, Bernstein, Bradley E., Dernburg, Abby F., Pirrotta, Vincenzo, Kuroda, Mitzi I., Noble, William S., Tullius, Thomas D., Kellis, Manolis, MacAlpine, David M., Strome, Susan, Elgin, Sarah C. R., Liu, Xiaole Shirley, Lieb, Jason D., Ahringer, Julie, Karpen, Gary H., Park, Peter J.
Published in Nature (London) (28.08.2014)
Published in Nature (London) (28.08.2014)
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Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain
Riddle, Nicole C, Jung, Youngsook L, Gu, Tingting, Alekseyenko, Artyom A, Asker, Dalal, Gui, Hongxing, Kharchenko, Peter V, Minoda, Aki, Plachetka, Annette, Schwartz, Yuri B, Tolstorukov, Michael Y, Kuroda, Mitzi I, Pirrotta, Vincenzo, Karpen, Gary H, Park, Peter J, Elgin, Sarah C R
Published in PLoS genetics (01.09.2012)
Published in PLoS genetics (01.09.2012)
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