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Roux, Simon, Brum, Jennifer R., Dutilh, Bas E., Sunagawa, Shinichi, Duhaime, Melissa B., Loy, Alexander, Poulos, Bonnie T., Solonenko, Natalie, Lara, Elena, Poulain, Julie, Pesant, Stéphane, Kandels-Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Searson, Sarah, Cruaud, Corinne, Alberti, Adriana, Duarte, Carlos M., Gasol, Josep M., Vaqué, Dolors, Bork, Peer, Acinas, Silvia G., Wincker, Patrick, Sullivan, Matthew B.
Published in Nature (London) (29.09.2016)
Published in Nature (London) (29.09.2016)
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Convergent genomic signatures of domestication in sheep and goats
Alberto, Florian J., Boyer, Frédéric, Orozco-terWengel, Pablo, Streeter, Ian, Servin, Bertrand, de Villemereuil, Pierre, Benjelloun, Badr, Librado, Pablo, Biscarini, Filippo, Colli, Licia, Barbato, Mario, Zamani, Wahid, Alberti, Adriana, Engelen, Stefan, Stella, Alessandra, Joost, Stéphane, Ajmone-Marsan, Paolo, Negrini, Riccardo, Orlando, Ludovic, Rezaei, Hamid Reza, Naderi, Saeid, Clarke, Laura, Flicek, Paul, Wincker, Patrick, Coissac, Eric, Kijas, James, Tosser-Klopp, Gwenola, Chikhi, Abdelkader, Bruford, Michael W., Taberlet, Pierre, Pompanon, François
Published in Nature communications (06.03.2018)
Published in Nature communications (06.03.2018)
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Structural and functional partitioning of bread wheat chromosome 3B
Choulet, Frédéric, Alberti, Adriana, Theil, Sébastien, Glover, Natasha, Barbe, Valérie, Daron, Josquin, Pingault, Lise, Sourdille, Pierre, Couloux, Arnaud, Paux, Etienne, Leroy, Philippe, Mangenot, Sophie, Guilhot, Nicolas, Le Gouis, Jacques, Balfourier, Francois, Alaux, Michael, Jamilloux, Véronique, Poulain, Julie, Durand, Céline, Bellec, Arnaud, Gaspin, Christine, Safar, Jan, Dolezel, Jaroslav, Rogers, Jane, Vandepoele, Klaas, Aury, Jean-Marc, Mayer, Klaus, Berges, Hélène, Quesneville, Hadi, Wincker, Patrick, Feuillet, Catherine
Published in Science (American Association for the Advancement of Science) (18.07.2014)
Published in Science (American Association for the Advancement of Science) (18.07.2014)
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Marine DNA Viral Macro- and Microdiversity from Pole to Pole
Gregory, Ann C., Zayed, Ahmed A., Conceição-Neto, Nádia, Temperton, Ben, Bolduc, Ben, Alberti, Adriana, Ardyna, Mathieu, Arkhipova, Ksenia, Carmichael, Margaux, Cruaud, Corinne, Dimier, Céline, Domínguez-Huerta, Guillermo, Ferland, Joannie, Kandels, Stefanie, Liu, Yunxiao, Marec, Claudie, Pesant, Stéphane, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Tremblay, Jean-Éric, Vik, Dean, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Michael, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Babin, Marcel, Bowler, Chris, Culley, Alexander I., de Vargas, Colomban, Dutilh, Bas E., Iudicone, Daniele, Karp-Boss, Lee, Roux, Simon, Sunagawa, Shinichi, Wincker, Patrick, Sullivan, Matthew B.
Published in Cell (16.05.2019)
Published in Cell (16.05.2019)
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Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods
Martin, Guillaume, Baurens, Franc-Christophe, Droc, Gaëtan, Rouard, Mathieu, Cenci, Alberto, Kilian, Andrzej, Hastie, Alex, Doležel, Jaroslav, Aury, Jean-Marc, Alberti, Adriana, Carreel, Françoise, D'Hont, Angélique
Published in BMC genomics (16.03.2016)
Published in BMC genomics (16.03.2016)
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
Berthelot, Camille, Brunet, Frédéric, Chalopin, Domitille, Juanchich, Amélie, Bernard, Maria, Noël, Benjamin, Bento, Pascal, Da Silva, Corinne, Labadie, Karine, Alberti, Adriana, Aury, Jean-Marc, Louis, Alexandra, Dehais, Patrice, Bardou, Philippe, Montfort, Jérôme, Klopp, Christophe, Cabau, Cédric, Gaspin, Christine, Thorgaard, Gary H., Boussaha, Mekki, Quillet, Edwige, Guyomard, René, Galiana, Delphine, Bobe, Julien, Volff, Jean-Nicolas, Genêt, Carine, Wincker, Patrick, Jaillon, Olivier, Crollius, Hugues Roest, Guiguen, Yann
Published in Nature communications (22.04.2014)
Published in Nature communications (22.04.2014)
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The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells
Picard, Franck, Cadoret, Jean-Charles, Audit, Benjamin, Arneodo, Alain, Alberti, Adriana, Battail, Christophe, Duret, Laurent, Prioleau, Marie-Noelle
Published in PLoS genetics (01.05.2014)
Published in PLoS genetics (01.05.2014)
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Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome
Pingault, Lise, Choulet, Frédéric, Alberti, Adriana, Glover, Natasha, Wincker, Patrick, Feuillet, Catherine, Paux, Etienne
Published in Genome Biology (10.02.2015)
Published in Genome Biology (10.02.2015)
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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
Denoeud, France, Carretero-Paulet, Lorenzo, Dereeper, Alexis, Droc, Gaëtan, Guyot, Romain, Pietrella, Marco, Zheng, Chunfang, Alberti, Adriana, Anthony, François, Aprea, Giuseppe, Aury, Jean-Marc, Bento, Pascal, Bernard, Maria, Bocs, Stéphanie, Campa, Claudine, Cenci, Alberto, Combes, Marie-Christine, Crouzillat, Dominique, Da Silva, Corinne, Daddiego, Loretta, De Bellis, Fabien, Dussert, Stéphane, Garsmeur, Olivier, Gayraud, Thomas, Guignon, Valentin, Jahn, Katharina, Jamilloux, Véronique, Joët, Thierry, Labadie, Karine, Lan, Tianying, Leclercq, Julie, Lepelley, Maud, Leroy, Thierry, Li, Lei-Ting, Librado, Pablo, Lopez, Loredana, Muñoz, Adriana, Noel, Benjamin, Pallavicini, Alberto, Perrotta, Gaetano, Poncet, Valérie, Pot, David, Priyono, Rigoreau, Michel, Rouard, Mathieu, Rozas, Julio, Tranchant-Dubreuil, Christine, VanBuren, Robert, Zhang, Qiong, Andrade, Alan C., Argout, Xavier, Bertrand, Benoît, de Kochko, Alexandre, Graziosi, Giorgio, Henry, Robert J, Jayarama, Ming, Ray, Nagai, Chifumi, Rounsley, Steve, Sankoff, David, Giuliano, Giovanni, Albert, Victor A., Wincker, Patrick, Lashermes, Philippe
Published in Science (American Association for the Advancement of Science) (05.09.2014)
Published in Science (American Association for the Advancement of Science) (05.09.2014)
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Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton
Cornejo-Castillo, Francisco M., Cabello, Ana M., Salazar, Guillem, Sánchez-Baracaldo, Patricia, Lima-Mendez, Gipsi, Hingamp, Pascal, Alberti, Adriana, Sunagawa, Shinichi, Bork, Peer, de Vargas, Colomban, Raes, Jeroen, Bowler, Chris, Wincker, Patrick, Zehr, Jonathan P., Gasol, Josep M., Massana, Ramon, Acinas, Silvia G.
Published in Nature communications (22.03.2016)
Published in Nature communications (22.03.2016)
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Phylogenomics using low‐depth whole genome sequencing: A case study with the olive tribe
Olofsson, Jill K., Cantera, Isabel, Van de Paer, Céline, Hong‐Wa, Cynthia, Zedane, Loubab, Dunning, Luke T., Alberti, Adriana, Christin, Pascal‐Antoine, Besnard, Guillaume
Published in Molecular ecology resources (01.07.2019)
Published in Molecular ecology resources (01.07.2019)
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A genome-wide comprehensive analysis of nucleosome positioning in yeast
Zeitler, Leo, André, Kévin, Alberti, Adriana, Denby Wilkes, Cyril, Soutourina, Julie, Goldar, Arach
Published in PLoS computational biology (24.01.2024)
Published in PLoS computational biology (24.01.2024)
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Global repositioning of transcription start sites in a plant-fermenting bacterium
Boutard, Magali, Ettwiller, Laurence, Cerisy, Tristan, Alberti, Adriana, Labadie, Karine, Salanoubat, Marcel, Schildkraut, Ira, Tolonen, Andrew C.
Published in Nature communications (16.12.2016)
Published in Nature communications (16.12.2016)
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Diversity and ecological footprint of Global Ocean RNA viruses
Dominguez-Huerta, Guillermo, Zayed, Ahmed A, Wainaina, James M, Guo, Jiarong, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Mohssen, Mohamed, Zablocki, Olivier, Pelletier, Eric, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Bowler, Chris, Eveillard, Damien, Guidi, Lionel, Karsenti, Eric, Kuhn, Jens H, Ogata, Hiroyuki, Wincker, Patrick, Culley, Alexander, Chaffron, Samuel, Sullivan, Matthew B
Published in Science (American Association for the Advancement of Science) (10.06.2022)
Published in Science (American Association for the Advancement of Science) (10.06.2022)
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The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes
Molitor, Anne M., Latrasse, David, Zytnicki, Matthias, Andrey, Philippe, Houba-Hérin, Nicole, Hachet, Mélanie, Battail, Christophe, Del Prete, Stefania, Alberti, Adriana, Quesneville, Hadi, Gaudin, Valérie
Published in The Plant cell (01.09.2016)
Published in The Plant cell (01.09.2016)
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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Farhat, Sarah, Le, Phuong, Kayal, Ehsan, Noel, Benjamin, Bigeard, Estelle, Corre, Erwan, Maumus, Florian, Florent, Isabelle, Alberti, Adriana, Aury, Jean-Marc, Barbeyron, Tristan, Cai, Ruibo, Da Silva, Corinne, Istace, Benjamin, Labadie, Karine, Marie, Dominique, Mercier, Jonathan, Rukwavu, Tsinda, Szymczak, Jeremy, Tonon, Thierry, Alves-de-Souza, Catharina, Rouzé, Pierre, Van de Peer, Yves, Wincker, Patrick, Rombauts, Stephane, Porcel, Betina M, Guillou, Laure
Published in BMC biology (06.01.2021)
Published in BMC biology (06.01.2021)
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Genome-defence small RNAs exapted for epigenetic mating-type inheritance
Singh, Deepankar Pratap, Saudemont, Baptiste, Guglielmi, Gérard, Arnaiz, Olivier, Goût, Jean-François, Prajer, Malgorzata, Potekhin, Alexey, Przybòs, Ewa, Aubusson-Fleury, Anne, Bhullar, Simran, Bouhouche, Khaled, Lhuillier-Akakpo, Maoussi, Tanty, Véronique, Blugeon, Corinne, Alberti, Adriana, Labadie, Karine, Aury, Jean-Marc, Sperling, Linda, Duharcourt, Sandra, Meyer, Eric
Published in Nature (London) (22.05.2014)
Published in Nature (London) (22.05.2014)
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The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material
Alsos, Inger Greve, Lavergne, Sebastien, Merkel, Marie Kristine Føreid, Boleda, Marti, Lammers, Youri, Alberti, Adriana, Pouchon, Charles, Denoeud, France, Pitelkova, Iva, Pușcaș, Mihai, Roquet, Cristina, Hurdu, Bogdan-Iuliu, Thuiller, Wilfried, Zimmermann, Niklaus E, Hollingsworth, Peter M, Coissac, Eric
Published in Plants (Basel) (01.04.2020)
Published in Plants (Basel) (01.04.2020)
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