High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model
Ma, Jun, Prince, Amanda L, Bader, David, Hu, Min, Ganu, Radhika, Baquero, Karalee, Blundell, Peter, Alan Harris, R, Frias, Antonio E, Grove, Kevin L, Aagaard, Kjersti M
Published in Nature communications (20.05.2014)
Published in Nature communications (20.05.2014)
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Journal Article
Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci
Onuchic, Vitor, Lurie, Eugene, Carrero, Ivenise, Pawliczek, Piotr, Patel, Ronak Y, Rozowsky, Joel, Galeev, Timur, Huang, Zhuoyi, Altshuler, Robert C, Zhang, Zhizhuo, Harris, R Alan, Coarfa, Cristian, Ashmore, Lillian, Bertol, Jessica W, Fakhouri, Walid D, Yu, Fuli, Kellis, Manolis, Gerstein, Mark, Milosavljevic, Aleksandar
Published in Science (American Association for the Advancement of Science) (28.09.2018)
Published in Science (American Association for the Advancement of Science) (28.09.2018)
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Journal Article
Transcriptome profiling of microRNA by Next-Gen deep sequencing reveals known and novel miRNA species in the lipid fraction of human breast milk
Munch, Erika M, Harris, R Alan, Mohammad, Mahmoud, Benham, Ashley L, Pejerrey, Sasha M, Showalter, Lori, Hu, Min, Shope, Cynthia D, Maningat, Patricia D, Gunaratne, Preethi H, Haymond, Morey, Aagaard, Kjersti
Published in PloS one (13.02.2013)
Published in PloS one (13.02.2013)
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Journal Article
Comparative molecular genomic analyses of a spontaneous rhesus macaque model of mismatch repair-deficient colorectal cancer
Ozirmak Lermi, Nejla, Gray, Stanton B, Bowen, Charles M, Reyes-Uribe, Laura, Dray, Beth K, Deng, Nan, Harris, R Alan, Raveendran, Muthuswamy, Benavides, Fernando, Hodo, Carolyn L, Taggart, Melissa W, Colbert Maresso, Karen, Sinha, Krishna M, Rogers, Jeffrey, Vilar, Eduardo
Published in PLoS genetics (21.04.2022)
Published in PLoS genetics (21.04.2022)
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Journal Article
Reproductive Longevity Predicts Mutation Rates in Primates
Thomas, Gregg W.C., Wang, Richard J., Puri, Arthi, Harris, R. Alan, Raveendran, Muthuswamy, Hughes, Daniel S.T., Murali, Shwetha C., Williams, Lawrence E., Doddapaneni, Harsha, Muzny, Donna M., Gibbs, Richard A., Abee, Christian R., Galinski, Mary R., Worley, Kim C., Rogers, Jeffrey, Radivojac, Predrag, Hahn, Matthew W.
Published in Current biology (08.10.2018)
Published in Current biology (08.10.2018)
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Journal Article
The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences
Xue, Cheng, Raveendran, Muthuswamy, Harris, R Alan, Fawcett, Gloria L, Liu, Xiaoming, White, Simon, Dahdouli, Mahmoud, Rio Deiros, David, Below, Jennifer E, Salerno, William, Cox, Laura, Fan, Guoping, Ferguson, Betsy, Horvath, Julie, Johnson, Zach, Kanthaswamy, Sree, Kubisch, H Michael, Liu, Dahai, Platt, Michael, Smith, David G, Sun, Binghua, Vallender, Eric J, Wang, Feng, Wiseman, Roger W, Chen, Rui, Muzny, Donna M, Gibbs, Richard A, Yu, Fuli, Rogers, Jeffrey
Published in Genome research (01.12.2016)
Published in Genome research (01.12.2016)
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Journal Article
Loci on chromosome 12q13.2 encompassing ERBB3, PA2G4 and RAB5B are associated with polycystic ovary syndrome
Alan Harris, R., Archer, Kellie J., Goodarzi, Mark O., York, Timothy P., Rogers, Jeffrey, Dunaif, Andrea, McAllister, Jan M., Strauss, Jerome F.
Published in Gene (05.02.2023)
Published in Gene (05.02.2023)
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Journal Article
Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta)
Brasó-Vives, Marina, Povolotskaya, Inna S, Hartasánchez, Diego A, Farré, Xavier, Fernandez-Callejo, Marcos, Raveendran, Muthuswamy, Harris, R Alan, Rosene, Douglas L, Lorente-Galdos, Belen, Navarro, Arcadi, Marques-Bonet, Tomas, Rogers, Jeffrey, Juan, David
Published in PLoS genetics (11.05.2020)
Published in PLoS genetics (11.05.2020)
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Journal Article
Season of conception in rural gambia affects DNA methylation at putative human metastable epialleles
Waterland, Robert A, Kellermayer, Richard, Laritsky, Eleonora, Rayco-Solon, Pura, Harris, R Alan, Travisano, Michael, Zhang, Wenjuan, Torskaya, Maria S, Zhang, Jiexin, Shen, Lanlan, Manary, Mark J, Prentice, Andrew M
Published in PLoS genetics (01.12.2010)
Published in PLoS genetics (01.12.2010)
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Journal Article
SVhound: detection of regions that harbor yet undetected structural variation
Paulin, Luis F, Raveendran, Muthuswamy, Harris, R Alan, Rogers, Jeffrey, von Haeseler, Arndt, Sedlazeck, Fritz J
Published in BMC bioinformatics (20.01.2023)
Published in BMC bioinformatics (20.01.2023)
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Journal Article
Reduced meiotic recombination in rhesus macaques and the origin of the human recombination landscape
Xue, Cheng, Rustagi, Navin, Liu, Xiaoming, Raveendran, Muthuswamy, Harris, R. Alan, Venkata, Manjunath Gorentla, Rogers, Jeffrey, Yu, Fuli
Published in PloS one (25.08.2020)
Published in PloS one (25.08.2020)
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Journal Article
Primary Human Placental Trophoblasts are Permissive for Zika Virus (ZIKV) Replication
Aagaard, Kjersti M, Lahon, Anismrita, Suter, Melissa A, Arya, Ravi P, Seferovic, Maxim D, Vogt, Megan B, Hu, Min, Stossi, Fabio, Mancini, Michael A, Harris, R Alan, Kahr, Maike, Eppes, Catherine, Rac, Martha, Belfort, Michael A, Park, Chun Shik, Lacorazza, Daniel, Rico-Hesse, Rebecca
Published in Scientific reports (27.01.2017)
Published in Scientific reports (27.01.2017)
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Journal Article
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
Costello, Joseph F, Harris, R Alan, Wang, Ting, Coarfa, Cristian, Nagarajan, Raman P, Hong, Chibo, Downey, Sara L, Johnson, Brett E, Fouse, Shaun D, Delaney, Allen, Zhao, Yongjun, Olshen, Adam, Ballinger, Tracy, Zhou, Xin, Forsberg, Kevin J, Gu, Junchen, Echipare, Lorigail, O'Geen, Henriette, Lister, Ryan, Pelizzola, Mattia, Xi, Yuanxin, Epstein, Charles B, Bernstein, Bradley E, Hawkins, R David, Ren, Bing, Chung, Wen-Yu, Gu, Hongcang, Bock, Christoph, Gnirke, Andreas, Zhang, Michael Q, Haussler, David, Ecker, Joseph R, Li, Wei, Farnham, Peggy J, Waterland, Robert A, Meissner, Alexander, Marra, Marco A, Hirst, Martin, Milosavljevic, Aleksandar
Published in Nature biotechnology (01.10.2010)
Published in Nature biotechnology (01.10.2010)
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Journal Article
A maternal high-fat diet modulates fetal SIRT1 histone and protein deacetylase activity in nonhuman primates
Suter, Melissa A, Chen, Aishe, Burdine, Marie S, Choudhury, Mahua, Harris, R Alan, Lane, Robert H, Friedman, Jacob E, Grove, Kevin L, Tackett, Alan J, Aagaard, Kjersti M
Published in The FASEB journal (01.12.2012)
Published in The FASEB journal (01.12.2012)
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Journal Article
Serial fecal microbiota transplantation alters mucosal gene expression in pediatric ulcerative colitis
Kellermayer, Richard, Nagy-Szakal, Dorottya, Harris, R Alan, Luna, Ruth Ann, Pitashny, Milena, Schady, Deborah, Mir, Sabina A V, Lopez, Monica E, Gilger, Mark A, Belmont, John, Hollister, Emily B, Versalovic, James
Published in The American journal of gastroenterology (01.04.2015)
Published in The American journal of gastroenterology (01.04.2015)
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Journal Article
Unusual sequence characteristics of human chromosome 19 are conserved across 11 nonhuman primates
Harris, R Alan, Raveendran, Muthuswamy, Worley, Kim C, Rogers, Jeffrey
Published in BMC ecology and evolution (27.02.2020)
Published in BMC ecology and evolution (27.02.2020)
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Journal Article
Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs
Amin, Viren, Harris, R Alan, Onuchic, Vitor, Jackson, Andrew R, Charnecki, Tim, Paithankar, Sameer, Lakshmi Subramanian, Sai, Riehle, Kevin, Coarfa, Cristian, Milosavljevic, Aleksandar
Published in Nature communications (18.02.2015)
Published in Nature communications (18.02.2015)
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Journal Article
In utero exposure to a maternal high-fat diet alters the epigenetic histone code in a murine model
Suter, Melissa A., PhD, Ma, Jun, PhD, Vuguin, Patricia M., MD, Hartil, Kirsten, PhD, Fiallo, Ariana, MS, Harris, R. Alan, PhD, Charron, Maureen J., PhD, Aagaard, Kjersti M., MD, PhD
Published in American journal of obstetrics and gynecology (01.05.2014)
Published in American journal of obstetrics and gynecology (01.05.2014)
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Journal Article