Focused Contrastive Loss for Classification With Pre-Trained Language Models
He, Jiayuan, Li, Yuan, Zhai, Zenan, Fang, Biaoyan, Thorne, Camilo, Druckenbrodt, Christian, Akhondi, Saber, Verspoor, Karin
Published in IEEE transactions on knowledge and data engineering (01.07.2024)
Published in IEEE transactions on knowledge and data engineering (01.07.2024)
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Journal Article
Annotated chemical patent corpus: a gold standard for text mining
Akhondi, Saber A, Klenner, Alexander G, Tyrchan, Christian, Manchala, Anil K, Boppana, Kiran, Lowe, Daniel, Zimmermann, Marc, Jagarlapudi, Sarma A R P, Sayle, Roger, Kors, Jan A, Muresan, Sorel
Published in PloS one (30.09.2014)
Published in PloS one (30.09.2014)
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Journal Article
A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC
Kors, Jan A, Clematide, Simon, Akhondi, Saber A, van Mulligen, Erik M, Rebholz-Schuhmann, Dietrich
Published in Journal of the American Medical Informatics Association : JAMIA (01.09.2015)
Published in Journal of the American Medical Informatics Association : JAMIA (01.09.2015)
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Journal Article
The CHEMDNER corpus of chemicals and drugs and its annotation principles
Krallinger, Martin, Rabal, Obdulia, Leitner, Florian, Vazquez, Miguel, Salgado, David, Lu, Zhiyong, Leaman, Robert, Lu, Yanan, Ji, Donghong, Lowe, Daniel M, Sayle, Roger A, Batista-Navarro, Riza Theresa, Rak, Rafal, Huber, Torsten, Rocktäschel, Tim, Matos, Sérgio, Campos, David, Tang, Buzhou, Xu, Hua, Munkhdalai, Tsendsuren, Ryu, Keun Ho, Ramanan, SV, Nathan, Senthil, Žitnik, Slavko, Bajec, Marko, Weber, Lutz, Irmer, Matthias, Akhondi, Saber A, Kors, Jan A, Xu, Shuo, An, Xin, Sikdar, Utpal Kumar, Ekbal, Asif, Yoshioka, Masaharu, Dieb, Thaer M, Choi, Miji, Verspoor, Karin, Khabsa, Madian, Giles, C Lee, Liu, Hongfang, Ravikumar, Komandur Elayavilli, Lamurias, Andre, Couto, Francisco M, Dai, Hong-Jie, Tsai, Richard Tzong-Han, Ata, Caglar, Can, Tolga, Usié, Anabel, Alves, Rui, Segura-Bedmar, Isabel, Martínez, Paloma, Oyarzabal, Julen, Valencia, Alfonso
Published in Journal of cheminformatics (2015)
Published in Journal of cheminformatics (2015)
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Journal Article
Automatic identification of relevant chemical compounds from patents
Akhondi, Saber A, Rey, Hinnerk, Schwörer, Markus, Maier, Michael, Toomey, John, Nau, Heike, Ilchmann, Gabriele, Sheehan, Mark, Irmer, Matthias, Bobach, Claudia, Doornenbal, Marius, Gregory, Michelle, Kors, Jan A
Published in Database : the journal of biological databases and curation (01.01.2019)
Published in Database : the journal of biological databases and curation (01.01.2019)
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Journal Article
The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents
Li, Yuan, Fang, Biaoyan, He, Jiayuan, Yoshikawa, Hiyori, Akhondi, Saber A., Druckenbrodt, Christian, Thorne, Camilo, Zhai, Zenan, Afzal, Zubair, Cohn, Trevor, Baldwin, Timothy, Verspoor, Karin
Published in Advances in Information Retrieval
Published in Advances in Information Retrieval
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Book Chapter
ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents
He, Jiayuan, Nguyen, Dat Quoc, Akhondi, Saber A, Druckenbrodt, Christian, Thorne, Camilo, Hoessel, Ralph, Afzal, Zubair, Zhai, Zenan, Fang, Biaoyan, Yoshikawa, Hiyori, Albahem, Ameer, Cavedon, Lawrence, Cohn, Trevor, Baldwin, Timothy, Verspoor, Karin
Published in Frontiers in research metrics and analytics (2021)
Published in Frontiers in research metrics and analytics (2021)
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Journal Article
Ambiguity of non-systematic chemical identifiers within and between small-molecule databases
Akhondi, Saber A., Muresan, Sorel, Williams, Antony J., Kors, Jan A.
Published in Journal of cheminformatics (16.11.2015)
Published in Journal of cheminformatics (16.11.2015)
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Journal Article
Chemical entity recognition in patents by combining dictionary-based and statistical approaches
Akhondi, Saber A, Pons, Ewoud, Afzal, Zubair, van Haagen, Herman, Becker, Benedikt F H, Hettne, Kristina M, van Mulligen, Erik M, Kors, Jan A
Published in Database : the journal of biological databases and curation (2016)
Published in Database : the journal of biological databases and curation (2016)
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Journal Article
Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents
Li, Yuan, Fang, Biaoyan, He, Jiayuan, Yoshikawa, Hiyori, Akhondi, Saber A., Druckenbrodt, Christian, Thorne, Camilo, Afzal, Zubair, Zhai, Zenan, Baldwin, Timothy, Verspoor, Karin
Published in Experimental IR Meets Multilinguality, Multimodality, and Interaction
Published in Experimental IR Meets Multilinguality, Multimodality, and Interaction
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Book Chapter
ChEMU: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents
Nguyen, Dat Quoc, Zhai, Zenan, Yoshikawa, Hiyori, Fang, Biaoyan, Druckenbrodt, Christian, Thorne, Camilo, Hoessel, Ralph, Akhondi, Saber A., Cohn, Trevor, Baldwin, Timothy, Verspoor, Karin
Published in Advances in Information Retrieval (24.03.2020)
Published in Advances in Information Retrieval (24.03.2020)
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Book Chapter
ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents
He, Jiayuan, Fang, Biaoyan, Yoshikawa, Hiyori, Li, Yuan, Akhondi, Saber A., Druckenbrodt, Christian, Thorne, Camilo, Afzal, Zubair, Zhai, Zenan, Cavedon, Lawrence, Cohn, Trevor, Baldwin, Timothy, Verspoor, Karin
Published in Advances in Information Retrieval
Published in Advances in Information Retrieval
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Book Chapter
Stress Testing BERT Anaphora Resolution Models for Reaction Extraction in Chemical Patents
Yueh, Chieling, Kanoulas, Evangelos, Martins, Bruno, Thorne, Camilo, Akhondi, Saber
Year of Publication 23.06.2023
Year of Publication 23.06.2023
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Journal Article
Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents
Li, Yuan, Fang, Biaoyan, He, Jiayuan, Yoshikawa, Hiyori, Akhondi, Saber A., Druckenbrodt, Christian, Thorne, Camilo, Afzal, Zubair, Zhai, Zenan, Baldwin, Timothy, Verspoor, Karin
Published in Experimental IR Meets Multilinguality, Multimodality, and Interaction
Published in Experimental IR Meets Multilinguality, Multimodality, and Interaction
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Book Chapter